CX296545
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 1.054e-62 Identity = 115/147 (78.23%), Postives = 129/147 (87.76%), Query Frame = 1 Query: 121 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561 S E RLYVGNLP+SMTSS L+E+FAEAGTVA+ EIVYDRVTDRSRGF FVTMGSVEEAKEAIRLFDGSQ+GGRTVKVNFPEVPRGGER M K++++YQGFVDSPHK+Y NL W LTSQGLRDAF QPG +SAKVI++R +GR Sbjct: 110 SVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGR 256
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.462e-27 Identity = 65/162 (40.12%), Postives = 97/162 (59.88%), Query Frame = 1 Query: 127 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP-----------RGGERAAMGPKLQNSYQG------FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561 E +L+VGNLP+S+ S++LA +F AG V E++YD++T RSRGFGFVTM + EE + A + F+G +I GR ++VN P RGG + G + NS G VDS +++Y GNL WG+ L++ F Q ++ AKV+++R +GR Sbjct: 85 EDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGR 246 HSP 2 Score: 75.8702 bits (185), Expect = 1.543e-13 Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 1 Query: 124 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 366 D + R+YVGNL + + +L E+F+E G V A++VYDR + RSRGFGFVT S +E +AI +G + GR+++V+ E Sbjct: 204 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.589e-26 Identity = 60/145 (41.38%), Postives = 91/145 (62.76%), Query Frame = 1 Query: 127 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561 E A+L+VGNLPY + S LA +F +AG V AE++Y+R TD+SRGFGFVTM +VEEA++A+ +++ + GR + VN + R GER P+ + ++IY GN+ WG+ L F ++SA+V+++R TGR Sbjct: 134 EDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVN--KAARRGERPERPPRT-------FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGR 269 HSP 2 Score: 87.0409 bits (214), Expect = 6.693e-17 Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 1 Query: 124 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 366 +++ R+YVGN+P+ + + L ++F+E G V SA +VYDR T RSRGFGFVTM S E +AI DG + GRT++VN E Sbjct: 227 EQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.076e-26 Identity = 64/162 (39.51%), Postives = 97/162 (59.88%), Query Frame = 1 Query: 127 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP-----------RGGERAAMGPKLQNSYQG------FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561 E +L+VGNLP+S+ S++LA +F AG V E++YD+++ RSRGFGFVTM + EE + A + F+G +I GR ++VN P RGG + G + NS G VDS +++Y GNL WG+ L++ F Q ++ AKV+++R +GR Sbjct: 86 EDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGR 247 HSP 2 Score: 76.6406 bits (187), Expect = 9.046e-14 Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 1 Query: 124 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 366 D + R+YVGNL + + +L E+F+E G V A++VYDR + RSRGFGFVT S +E +AI +G + GR+++V+ E Sbjct: 205 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.076e-26 Identity = 58/142 (40.85%), Postives = 89/142 (62.68%), Query Frame = 1 Query: 136 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561 +++VGNLP+S S++LAE+F AG V E++YD++T RSRGFGFVTM S EE + A + F+G ++ GR ++VN P E ++ + G DS +++Y GNL WG+ L F Q ++ AKV+++R +GR Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGG--GSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGR 227 HSP 2 Score: 77.411 bits (189), Expect = 5.303e-14 Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1 Query: 124 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 357 D + R+YVGNL + + +L +F+E G V A++VYDR + RSRGFGFVT S EE AI DG + GR ++V+ Sbjct: 185 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.030e-25 Identity = 61/162 (37.65%), Postives = 97/162 (59.88%), Query Frame = 1 Query: 106 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF-PEVPRGGERAAMGPK--LQNSYQGF-------VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561 PK + +L+VGNLP+++ S+ LA++F AG V E++YD++T RSRGFGFVTM SV E + A + F+G ++ GR ++VN P P+ + + GP+ +S G+ S +++Y GNL WG+ L F Q ++ A+VI++R +GR Sbjct: 82 PKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGR 243 HSP 2 Score: 73.1738 bits (178), Expect = 1.000e-12 Identity = 33/77 (42.86%), Postives = 51/77 (66.23%), Query Frame = 1 Query: 136 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 366 R+YVGNL + + +L +F+E G V A ++YDR + RS+GFGFVT S +E + AI+ DG+ + GR ++V+ E Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.757e-25 Identity = 61/145 (42.07%), Postives = 86/145 (59.31%), Query Frame = 1 Query: 127 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561 E A+L+VGNLPY + S LA++F +AG V AE++Y+R TDRSRGFGFVTM +VEEA +A+ L+ + GR + VN PRG Q +Y +IY GN+ W + L F ++SA+V+F+R +GR Sbjct: 95 EDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVN-KAAPRGSRPERAPRTFQPTY--------RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGR 230 HSP 2 Score: 84.3445 bits (207), Expect = 4.338e-16 Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1 Query: 136 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 366 R+YVGN+P+ + + L +VF+E G V SA +V+DR + RSRGFGFVTM S E EAI DG + GRT++VN E Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 3.915e-25 Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 1 Query: 127 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGG-ERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561 E A+L+VGNLPY + S LA +F AG V AE++Y+R TDRSRGFGFVTM +VEEA++A+ L +G + GR + VN PRG ERA +G + ++Y GNL W + + L F ++SA+V+ +R TGR Sbjct: 53 EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN-KAAPRGSPERAP---------RGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGR 188 HSP 2 Score: 84.7297 bits (208), Expect = 3.322e-16 Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 1 Query: 124 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 366 + + R+YVGNLP+ + +S L ++F+E G V SA +V DR T RSRGFGFVTM S E +AI DG + GR V+VN E Sbjct: 146 EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 5.113e-25 Identity = 58/148 (39.19%), Postives = 92/148 (62.16%), Query Frame = 1 Query: 136 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ------GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561 +++VGNL +S S++LAE+F AG V E++YD++T RSRGFGFVTM S EE + A + F+G ++ GR ++VN P E ++ + +S++ G DS +++Y GNL WG+ L F Q ++ AKV+++R +GR Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSF--RENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGR 233 HSP 2 Score: 77.411 bits (189), Expect = 5.303e-14 Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1 Query: 124 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 357 D + R+YVGNL + + +L +F+E G V A++VYDR + RSRGFGFVT S EE AI DG + GR ++V+ Sbjct: 191 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 268
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.259e-23 Identity = 59/145 (40.69%), Postives = 88/145 (60.69%), Query Frame = 1 Query: 127 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561 E A+L+VGNL Y + S +LA +F +AGTV AE++Y+R TD+SRGFGFVTM SV+EA+ A+ F+ + GR + VN PR G R P++ + ++Y GNL W + + L F ++ A+V+++R TGR Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN-KAAPR-GSRPERAPRV-------YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGR 283 HSP 2 Score: 87.8113 bits (216), Expect = 3.924e-17 Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 1 Query: 124 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE--VPRGG 381 + A R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVTM V+E EAI DG + GR ++VN E PR G Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRG 328 The following BLAST results are available for this feature:
BLAST of CX296545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296545 ID=CX296545; Name=CX296545; organism=Citrus clementina; type=EST; length=561bpback to top |