CX296545

Overview
NameCX296545
Unique NameCX296545
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296545_ssr62 microsatellite CX296545_ssr62:62..85. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.054e-62
Identity = 115/147 (78.23%), Postives = 129/147 (87.76%), Query Frame = 1
Query:  121 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561
            S E  RLYVGNLP+SMTSS L+E+FAEAGTVA+ EIVYDRVTDRSRGF FVTMGSVEEAKEAIRLFDGSQ+GGRTVKVNFPEVPRGGER  M  K++++YQGFVDSPHK+Y  NL W LTSQGLRDAF  QPG +SAKVI++R +GR
Sbjct:  110 SVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGR 256          
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.462e-27
Identity = 65/162 (40.12%), Postives = 97/162 (59.88%), Query Frame = 1
Query:  127 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP-----------RGGERAAMGPKLQNSYQG------FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561
            E  +L+VGNLP+S+ S++LA +F  AG V   E++YD++T RSRGFGFVTM + EE + A + F+G +I GR ++VN    P           RGG  +  G +  NS  G       VDS +++Y GNL WG+    L++ F  Q  ++ AKV+++R +GR
Sbjct:   85 EDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGR 246          

HSP 2 Score: 75.8702 bits (185), Expect = 1.543e-13
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  124 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 366
            D + R+YVGNL + +   +L E+F+E G V  A++VYDR + RSRGFGFVT  S +E  +AI   +G  + GR+++V+  E
Sbjct:  204 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284          
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.589e-26
Identity = 60/145 (41.38%), Postives = 91/145 (62.76%), Query Frame = 1
Query:  127 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561
            E A+L+VGNLPY + S  LA +F +AG V  AE++Y+R TD+SRGFGFVTM +VEEA++A+ +++   + GR + VN  +  R GER    P+         +  ++IY GN+ WG+    L   F     ++SA+V+++R TGR
Sbjct:  134 EDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVN--KAARRGERPERPPRT-------FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGR 269          

HSP 2 Score: 87.0409 bits (214), Expect = 6.693e-17
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  124 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 366
            +++ R+YVGN+P+ +  + L ++F+E G V SA +VYDR T RSRGFGFVTM S  E  +AI   DG  + GRT++VN  E
Sbjct:  227 EQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307          
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.076e-26
Identity = 64/162 (39.51%), Postives = 97/162 (59.88%), Query Frame = 1
Query:  127 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP-----------RGGERAAMGPKLQNSYQG------FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561
            E  +L+VGNLP+S+ S++LA +F  AG V   E++YD+++ RSRGFGFVTM + EE + A + F+G +I GR ++VN    P           RGG  +  G +  NS  G       VDS +++Y GNL WG+    L++ F  Q  ++ AKV+++R +GR
Sbjct:   86 EDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGR 247          

HSP 2 Score: 76.6406 bits (187), Expect = 9.046e-14
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  124 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 366
            D + R+YVGNL + +   +L E+F+E G V  A++VYDR + RSRGFGFVT  S +E  +AI   +G  + GR+++V+  E
Sbjct:  205 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285          
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.076e-26
Identity = 58/142 (40.85%), Postives = 89/142 (62.68%), Query Frame = 1
Query:  136 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561
            +++VGNLP+S  S++LAE+F  AG V   E++YD++T RSRGFGFVTM S EE + A + F+G ++ GR ++VN    P   E ++     +    G  DS +++Y GNL WG+    L   F  Q  ++ AKV+++R +GR
Sbjct:   88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGG--GSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGR 227          

HSP 2 Score: 77.411 bits (189), Expect = 5.303e-14
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  124 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 357
            D + R+YVGNL + +   +L  +F+E G V  A++VYDR + RSRGFGFVT  S EE   AI   DG  + GR ++V+
Sbjct:  185 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262          
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.030e-25
Identity = 61/162 (37.65%), Postives = 97/162 (59.88%), Query Frame = 1
Query:  106 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF-PEVPRGGERAAMGPK--LQNSYQGF-------VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561
            PK  +     +L+VGNLP+++ S+ LA++F  AG V   E++YD++T RSRGFGFVTM SV E + A + F+G ++ GR ++VN  P  P+  +  + GP+    +S  G+         S +++Y GNL WG+    L   F  Q  ++ A+VI++R +GR
Sbjct:   82 PKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGR 243          

HSP 2 Score: 73.1738 bits (178), Expect = 1.000e-12
Identity = 33/77 (42.86%), Postives = 51/77 (66.23%), Query Frame = 1
Query:  136 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 366
            R+YVGNL + +   +L  +F+E G V  A ++YDR + RS+GFGFVT  S +E + AI+  DG+ + GR ++V+  E
Sbjct:  205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281          
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.757e-25
Identity = 61/145 (42.07%), Postives = 86/145 (59.31%), Query Frame = 1
Query:  127 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561
            E A+L+VGNLPY + S  LA++F +AG V  AE++Y+R TDRSRGFGFVTM +VEEA +A+ L+    + GR + VN    PRG          Q +Y        +IY GN+ W +    L   F     ++SA+V+F+R +GR
Sbjct:   95 EDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVN-KAAPRGSRPERAPRTFQPTY--------RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGR 230          

HSP 2 Score: 84.3445 bits (207), Expect = 4.338e-16
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1
Query:  136 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 366
            R+YVGN+P+ +  + L +VF+E G V SA +V+DR + RSRGFGFVTM S  E  EAI   DG  + GRT++VN  E
Sbjct:  192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268          
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.915e-25
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 1
Query:  127 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGG-ERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561
            E A+L+VGNLPY + S  LA +F  AG V  AE++Y+R TDRSRGFGFVTM +VEEA++A+ L +G  + GR + VN    PRG  ERA          +G  +   ++Y GNL W + +  L   F     ++SA+V+ +R TGR
Sbjct:   53 EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN-KAAPRGSPERAP---------RGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGR 188          

HSP 2 Score: 84.7297 bits (208), Expect = 3.322e-16
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  124 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 366
            + + R+YVGNLP+ + +S L ++F+E G V SA +V DR T RSRGFGFVTM S  E  +AI   DG  + GR V+VN  E
Sbjct:  146 EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226          
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.113e-25
Identity = 58/148 (39.19%), Postives = 92/148 (62.16%), Query Frame = 1
Query:  136 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ------GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561
            +++VGNL +S  S++LAE+F  AG V   E++YD++T RSRGFGFVTM S EE + A + F+G ++ GR ++VN    P   E ++   +  +S++      G  DS +++Y GNL WG+    L   F  Q  ++ AKV+++R +GR
Sbjct:   88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSF--RENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGR 233          

HSP 2 Score: 77.411 bits (189), Expect = 5.303e-14
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  124 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 357
            D + R+YVGNL + +   +L  +F+E G V  A++VYDR + RSRGFGFVT  S EE   AI   DG  + GR ++V+
Sbjct:  191 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 268          
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.259e-23
Identity = 59/145 (40.69%), Postives = 88/145 (60.69%), Query Frame = 1
Query:  127 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 561
            E A+L+VGNL Y + S +LA +F +AGTV  AE++Y+R TD+SRGFGFVTM SV+EA+ A+  F+   + GR + VN    PR G R    P++        +   ++Y GNL W + +  L   F     ++ A+V+++R TGR
Sbjct:  148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN-KAAPR-GSRPERAPRV-------YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGR 283          

HSP 2 Score: 87.8113 bits (216), Expect = 3.924e-17
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  124 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE--VPRGG 381
            + A R+YVGNLP+ + +  L ++F+E G V  A +VYDR T RSRGFGFVTM  V+E  EAI   DG  + GR ++VN  E   PR G
Sbjct:  241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRG 328          
The following BLAST results are available for this feature:
BLAST of CX296545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
ROC5_NICSY1.054e-6278.2333 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICSY5.462e-2740.1229 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC4_NICSY1.589e-2641.3831 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICPL2.076e-2639.5131 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY2.076e-2640.8529 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_ARATH1.030e-2537.65Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC3_NICSY1.757e-2542.0728 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_SPIOL3.915e-2543.8428 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC1_NICPL5.113e-2539.1930 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH1.259e-2340.6931 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC05142H09SK FerrChloL1 Citrus clementina cDNA clone C05142H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296545 ID=CX296545; Name=CX296545; organism=Citrus clementina; type=EST; length=561bp
GATTCGGCCGAGGCCTCGTGCCGAATTCGGCACGAGGGCCAAGATGAGCC
AGAAACCGAACAAGAAGAAGAAGAAGAAGAAGAAGCAGTAGAAGAGGAAG
AAGAGCCAAAGGTGGCTGCGTCTGATGAAGCGGCGAGGCTTTACGTAGGG
AATTTGCCTTATTCGATGACTTCTTCTTCGTTAGCTGAGGTTTTTGCGGA
GGCTGGTACCGTGGCTTCAGCTGAGATTGTTTACGATCGAGTTACGGACA
GAAGCAGAGGGTTTGGTTTTGTTACTATGGGGAGTGTGGAAGAAGCTAAA
GAAGCAATTCGTTTATTTGATGGTTCCCAAATTGGTGGCCGAACTGTAAA
GGTGAACTTCCCAGAAGTGCCAAGAGGAGGTGAAAGGGCAGCAATGGGGC
CAAAATTACAGAACAGTTACCAGGGCTTTGTCGACAGCCCTCACAAGATC
TATGCTGGAAATCTTGGCTGGGGTCTGACTTCTCAGGGTTTAAGAGATGC
TTTTCAGGGCCAGCCAGGTTTATTGAGTGCCAAGGTTATCTTTGAGAGAT
ACACTGGAAGA
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