CX296553

Overview
NameCX296553
Unique NameCX296553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length327
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: MENE_BACLD (2-succinylbenzoate--CoA ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=menE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.056e-16
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  102 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            GEI ++G  VMKGYLKN  AN+++F +GWF +GD+     D ++ + DR  D+IISGGENI   EVE VL  HP
Sbjct:  335 GEITVKGPTVMKGYLKNEAANKDSFNDGWFKTGDIGYFDDDGFLYVLDRRSDLIISGGENIYPAEVEAVLLSHP 408          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: LCFB_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfB PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.333e-15
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3
Query:   99 IGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            +GE++++G  VMKGY K P   E A  +GW ++GDLA +  D Y  I DR KD+II GG N+   EVE+VLY HP
Sbjct:  362 VGELIVKGPNVMKGYYKMPMETEHALKDGWLYTGDLARRDEDGYFYIVDRKKDMIIVGGYNVYPREVEEVLYSHP 436          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: MENE_GEOKA (2-succinylbenzoate--CoA ligase OS=Geobacillus kaustophilus GN=menE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.925e-14
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 3
Query:   81 PADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            PA     GEIV++G  V KGY + P+A  +A   GWF +GD+     D ++ + DR  D+IISGGEN+   EVE VL  HP
Sbjct:  327 PAAPHEAGEIVVKGPNVTKGYWQRPEATAQAIRGGWFFTGDIGYLDEDGFLYVLDRRSDLIISGGENVYPAEVEAVLLSHP 407          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: MENE_BACA2 (2-succinylbenzoate--CoA ligase OS=Bacillus amyloliquefaciens (strain FZB42) GN=menE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.925e-14
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 3
Query:  102 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            GEI ++G  VMKGY     AN+ AF NGWF +GDL     + ++ + DR  D+IISGGENI   EVE  L  HP
Sbjct:  335 GEITVKGPNVMKGYYHRDDANQAAFHNGWFKTGDLGYLDDEGFLYVLDRRSDLIISGGENIYPAEVEAALLAHP 408          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: MENE_BACCN (2-succinylbenzoate--CoA ligase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=menE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.283e-14
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 3
Query:   78 VPADGKTI-----GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPL 326
            +  DGK +     GEIV++G  V +GY K   A  E   +GW H+GDL     + ++ + DR  D+IISGGENI   ++E+VL  HPL
Sbjct:  318 IEKDGKVMPANVEGEIVVKGPNVTRGYFKREDATRETIVDGWLHTGDLGYVDDEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPL 405          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: MENE_BACSU (2-succinylbenzoate--CoA ligase OS=Bacillus subtilis GN=menE PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.600e-14
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 3
Query:  102 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            GEI+++G  VMK Y     ANE +F NGW  +GDL     + ++ + DR  D+IISGGENI   EVE VL  HP
Sbjct:  334 GEIMVKGPNVMKSYFNRESANEASFQNGWLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHP 407          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: MENE_OCEIH (2-succinylbenzoate--CoA ligase OS=Oceanobacillus iheyensis GN=menE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.247e-13
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 3
Query:   99 IGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 311
            IGEI+++G  V KGY K  + N+E F N W H+GD+       Y+ + DR  D+IISGGENI   E+E VL
Sbjct:  334 IGEILVKGPMVTKGYYKRAETNKEVFENNWLHTGDMGYLDEQGYLYVVDRRNDLIISGGENIYPSEIENVL 404          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: MENE_GEOSW (2-succinylbenzoate--CoA ligase OS=Geobacillus sp. (strain WCH70) GN=menE PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.128e-13
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 3
Query:  102 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 320
            GEIV++G  V KGYL  P A  +A   GWF++GD+     D ++ + DR  D+IISGGEN+   E+E VL  H
Sbjct:  335 GEIVVKGPNVTKGYLHRPDATAKAIRGGWFYTGDIGYIDEDGFLYVLDRRSDLIISGGENVYPAEIEAVLLSH 407          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: MENE_BACWK (2-succinylbenzoate--CoA ligase OS=Bacillus weihenstephanensis (strain KBAB4) GN=menE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 34/74 (45.95%), Postives = 45/74 (60.81%), Query Frame = 3
Query:  102 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            GEIV++G  V  GY     A  EA  NGW H+GDL     + ++ + DR  D+IISGGENI   ++E+VL  HP
Sbjct:  331 GEIVVKGPNVTGGYFNREDATHEAIRNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHP 404          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: YNGI_BACSU (Putative acyl-CoA synthetase yngI OS=Bacillus subtilis GN=yngI PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.630e-13
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 3
Query:  102 GEIVMRGSCVMKGYLKNPKANEEAFAN-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            GE+  RG  VMKGY K+  A  +A  + GW  +GDLAV   D Y  I  RLKD++I GGENI   E+E+ LY HP
Sbjct:  389 GELCTRGYHVMKGYYKDKDATRKAINHDGWLFTGDLAVMDEDGYCRITGRLKDMLIRGGENIYPREIEEFLYQHP 463          
The following BLAST results are available for this feature:
BLAST of CX296553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
MENE_BACLD2.056e-1652.702-succinylbenzoate--CoA ligase OS=Bacillus licheni... [more]
LCFB_BACSU1.333e-1550.67Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
MENE_GEOKA1.925e-1445.682-succinylbenzoate--CoA ligase OS=Geobacillus kaus... [more]
MENE_BACA21.925e-1450.002-succinylbenzoate--CoA ligase OS=Bacillus amyloli... [more]
MENE_BACCN3.283e-1442.052-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
MENE_BACSU5.600e-1448.652-succinylbenzoate--CoA ligase OS=Bacillus subtili... [more]
MENE_OCEIH1.247e-1347.892-succinylbenzoate--CoA ligase OS=Oceanobacillus i... [more]
MENE_GEOSW2.128e-1346.582-succinylbenzoate--CoA ligase OS=Geobacillus sp. ... [more]
MENE_BACWK2.779e-1345.952-succinylbenzoate--CoA ligase OS=Bacillus weihens... [more]
YNGI_BACSU3.630e-1350.67Putative acyl-CoA synthetase yngI OS=Bacillus subt... [more]

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Properties
Property NameValue
Genbank descriptionC05146A09SK FerrChloL1 Citrus clementina cDNA clone C05146A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296553 ID=CX296553; Name=CX296553; organism=Citrus clementina; type=EST; length=327bp
GAGGTCATGCCCGTCAAGGGGTCAGGACTATTTGCCTGGATGGCTTAGAT
GTTATCGACGCGAGAACAAACCAACCGGTTCCTGCTGATGGGAAAACAAT
TGGAGAGATAGTGATGCGTGGCAGTTGTGTGATGAAGGGTTACCTAAAGA
ACCCTAAAGCCAACGAGGAAGCTTTTGCAAACGGGTGGTTTCATTCTGGG
GATCTTGCTGTGAAGCATCCGGATAATTATATCGAAATTAAAGACAGATT
AAAGGATGTAATTATCTCTGGAGGTGAAAATATTAGCAGTGTTGAAGTAG
AGAAAGTGCTGTACTTGCATCCATTAG
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