CX296571

Overview
NameCX296571
Unique NameCX296571
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15114 contig Ccv1_Contig15114:1..507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296571 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 7.544e-70
Identity = 133/138 (96.38%), Postives = 133/138 (96.38%), Query Frame = 3
Query:  111 MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFS 524
            MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTD    GAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL GQLFS
Sbjct:    1 MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFS 138          
BLAST of CX296571 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.135e-41
Identity = 82/116 (70.69%), Postives = 96/116 (82.76%), Query Frame = 3
Query:  177 SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFS 524
            SSF+G P++PS +R+QP K+    ++S+S + SPPYDL  F FDPIKESIVSREMTRRYM DMITYADTD    GAGS+GL C YELSKNP++Q+AIIEQSVSPGGGAWL GQLFS
Sbjct:   20 SSFYGTPLAPSSIRVQPTKAGAKPSISMSGAPSPPYDLKAFTFDPIKESIVSREMTRRYMMDMITYADTDVVVVGAGSSGLVC-YELSKNPSVQVAIIEQSVSPGGGAWLGGQLFS 134          
BLAST of CX296571 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.634e-41
Identity = 91/139 (65.47%), Postives = 108/139 (77.70%), Query Frame = 3
Query:  111 MAAMASTAFAPSVSSTT-NKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFS 524
            MAA+AST    S+SST   +LFDSSFHG+ +S + + +      +P + S+ A+ +  YDLN F FDPIKESIVSREMTRRYMTDMITYA+TD    GAGSAGLS AYE+SKNPN+Q+AIIEQSVSPGGGAWL GQLFS
Sbjct:    1 MAAIASTL---SLSSTKPQRLFDSSFHGSAISAAPISI----GLKPRSFSVRATTAG-YDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFS 131          
BLAST of CX296571 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.308e-36
Identity = 82/136 (60.29%), Postives = 96/136 (70.59%), Query Frame = 3
Query:  150 SSTTNKLFDSSFHGAPMSPSLLRLQPIK----------SSRPNNLSISASAS-PPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFS 524
            ++  + L  SSF G+ + P+  R  P             + P   S+S S+S PPYDL +F+F PIKESIVSREMTRRYMTDMITYADTD    GAGSAGLSCAYELSK+P + IAI+EQSVSPGGGAWL GQLFS
Sbjct:    3 TAAASSLLKSSFAGSRL-PAATRTTPASLVVATGPRGAGAGPICASMSMSSSNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKDPAVSIAIVEQSVSPGGGAWLGGQLFS 137          
BLAST of CX296571 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.588e-35
Identity = 81/134 (60.45%), Postives = 94/134 (70.15%), Query Frame = 3
Query:  150 SSTTNKLFDSSFHGAPMSPSLLRLQ---------PIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFS 524
            ++  + L  SSF G+ + PS  R           P     P   SIS S +PPYDL +F+F PIKESIVSREMTRRYMTDMIT+ADTD    GAGSAGLSCAYELSK+P + +AI+EQSVSPGGGAWL GQLFS
Sbjct:    3 TTAASSLLKSSFAGSRL-PSATRTTTPSSVAVATPRAGGGPIRASIS-SPNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITHADTDVVIVGAGSAGLSCAYELSKDPTVSVAIVEQSVSPGGGAWLGGQLFS 134          
BLAST of CX296571 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 8.458e-21
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 3
Query:  264 ASASPPYDLN-TFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-SKNPNIQIAIIEQSVSPGGGAWLSGQLFS 524
            + A P Y L+ +F F PI+ES VSR MTRRY +D+  YA++D    GAGSAGL+ AY + ++ P+++IAIIE SV+PGGGAWL GQLFS
Sbjct:   37 SKAYPTYSLDESFSFAPIRESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIEASVAPGGGAWLGGQLFS 125          
BLAST of CX296571 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.884e-20
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 3
Query:  297 FKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-SKNPNIQIAIIEQSVSPGGGAWLSGQLFS 524
            FKF PI+ES VSR MTRRY  D+  YA++D    GAGS GLS AY L  K P+++IAIIE SVSPGGGAWL GQLFS
Sbjct:   44 FKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIIGAGSCGLSAAYILGKKRPDLKIAIIEASVSPGGGAWLGGQLFS 120          
BLAST of CX296571 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.461e-20
Identity = 50/77 (64.94%), Postives = 59/77 (76.62%), Query Frame = 3
Query:  297 FKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLSGQLFS 524
            FKF PI+ES VSR MTRRY  D+  YA++D    GAGS GLS AY L+K  P+++IAI+E SVSPGGGAWL GQLFS
Sbjct:   48 FKFAPIRESQVSRAMTRRYFEDLDKYAESDVVIVGAGSCGLSTAYVLAKARPDLKIAIVEASVSPGGGAWLGGQLFS 124          
BLAST of CX296571 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.351e-20
Identity = 50/77 (64.94%), Postives = 57/77 (74.03%), Query Frame = 3
Query:  297 FKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-SKNPNIQIAIIEQSVSPGGGAWLSGQLFS 524
            FKF PI+ES VSR MTRRY  D+  YA++D    GAGS GLS  Y L  K P+++IAIIE SVSPGGGAWL GQLFS
Sbjct:   48 FKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIVGAGSCGLSTRYILGKKRPDLKIAIIEASVSPGGGAWLGGQLFS 124          
BLAST of CX296571 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.641e-19
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 3
Query:  219 LQPIKSSRPNNLSISASA---SPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-SKNPNIQIAIIEQSVSPGGGAWLSGQLFS 524
            + P+KS + +N +++  A    P  +L   KF PIKE  V R M RRY  DM   A +D    GAGSAGLSCAY L +  P+++I I+E +V+PGGG WL GQL S
Sbjct:   24 MDPLKSKQQSNATVNKPAFKPEPAVNLTPIKFAPIKEHQVQRAMVRRYFQDMEERAISDVIIVGAGSAGLSCAYALGTARPDLKITILESNVAPGGGCWLGGQLMS 129          
The following BLAST results are available for this feature:
BLAST of CX296571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
THI4_CITSI7.544e-7096.38Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL1.135e-4170.69Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH5.634e-4165.47Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE9.308e-3660.29Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE1.588e-3560.45Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI2_SCHPO8.458e-2157.30Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_FUSOX1.884e-2066.23Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR2.461e-2064.94Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_FUSSH9.351e-2064.94Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_UROFA4.641e-1947.17Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]

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Properties
Property NameValue
Genbank descriptionC05146C03SK FerrChloL1 Citrus clementina cDNA clone C05146C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296571 ID=CX296571; Name=CX296571; organism=Citrus clementina; type=EST; length=526bp
CCGGGCTGCAGATTCGGCAGAGGCCTCGTGCCGAATTCGGCACGAGGCAA
ATTACTTCTCATTATCAAACTTCTAAGCAGCAGGGGGAAGGAGGGGTAAA
AAAAAAAAACATGGCAGCCATGGCTTCTACAGCTTTCGCTCCTTCAGTTT
CGTCTACCACCAATAAGCTCTTTGACTCATCCTTTCATGGGGCTCCCATG
TCACCTTCTCTTCTACGTCTTCAACCCATCAAATCTTCTCGTCCCAACAA
CTTGTCCATTTCTGCTTCTGCTTCTCCTCCTTATGACTTGAACACTTTCA
AGTTTGACCCCATCAAAGAATCCATTGTTTCTCGTGAAATGACGCGCAGG
TACATGACGGACATGATCACTTATGCTGACACTGATGTGGTAGTGGTTGG
TGCTGGCTCTGCTGGCCTCTCTTGTGCTTATGAGCTCAGCAAAAACCCCA
ACATTCAGATTGCTATTATCGAACAGTCTGTTAGCCCCGGCGGTGGCGCG
TGGCTCAGTGGACAGCTCTTCTCTGC
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