CX296572

Overview
NameCX296572
Unique NameCX296572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296572_ssr444 microsatellite CX296572_ssr444:444..458. BLAST: Citrus ESTs to Prunus persica proteins V1
CX296572_ssr586 microsatellite CX296572_ssr586:586..600. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 3.053e-62
Identity = 105/118 (88.98%), Postives = 115/118 (97.46%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKAAA 408
            MGRAPCCEKMGLKKGPWTPEED++L+AHI++HGH NWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEE+TII+LH++LGNRWSAIAARLPGRTDNEIKNVWHTHLKK+  A
Sbjct:    1 MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLDA 118          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.905e-54
Identity = 98/149 (65.77%), Postives = 113/149 (75.84%), Query Frame = 1
Query:   58 GRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKAAAVLKQNQKAXXXXXXXXXSDDHKQNSKATTAHD 504
            GRAPCC K+GL +G WTP+ED  LIA+I+KHGH NWRALPKQAGLLRCGKSCRLRWINYLRPD+KRGNF+ EEEE II LH +LGN+WS IAA LPGRTDNEIKNVW+THLKKK A   K+   A         +      + +TT H+
Sbjct:    4 GRAPCCAKVGLNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKVAQREKKKAGAGSGDAGTPATAPLSSATSSTTTHN 152          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.624e-47
Identity = 82/115 (71.30%), Postives = 96/115 (83.48%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            MGR+PCCEK    KG WT EED  L+A+IK HG   WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNF++EE+E II LH +LGN+WS IA RLPGRTDNEIKN W+TH+++K
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRK 115          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.073e-47
Identity = 79/115 (68.70%), Postives = 98/115 (85.22%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            MGR+PCCEK  + KG WT EED++L+ +I+KHG   WR+LP+ AGL RCGKSCRLRW+NYLRPD+KRGNF++EE+E II LH +LGN+WS IA RLPGRTDNEIKN W+TH+K+K
Sbjct:    1 MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRK 115          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.377e-46
Identity = 83/115 (72.17%), Postives = 94/115 (81.74%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            MGR+PCCEK    KG WT EED  L A+IK HG   WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFS EE+E II LH +LGN+WS IA RLPGRTDNEIKN W+TH+++K
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRK 115          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.377e-46
Identity = 81/115 (70.43%), Postives = 96/115 (83.48%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            MGR+PCCEK    KG WT EED  L+A+I+ HG   WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNF++EE+E II LH +LGN+WS IA RLPGRTDNEIKN W+TH+++K
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRK 115          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.068e-46
Identity = 81/115 (70.43%), Postives = 96/115 (83.48%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            MGR PCCEK+GLK+G WT EED++L  +I +HG  +WR+LPK AGLLRCGKSCRLRWINYLR D+KRGN SKEEE+ II LH  LGNRWS IA+ LPGRTDNEIKN W++HL ++
Sbjct:    1 MGRTPCCEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQ 115          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.232e-46
Identity = 81/115 (70.43%), Postives = 95/115 (82.61%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            MGR+PCCEK    KG WT EED+ LI +I+ HG   WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNF++EE+E II LH +LGN+WS IA  LPGRTDNEIKN W+TH+K+K
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRK 115          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.834e-46
Identity = 79/115 (68.70%), Postives = 95/115 (82.61%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            MGR+PCCEK    KG WT EED+ L+ +I+ HG   WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNF+ +E++ II LH +LGN+WS IA RLPGRTDNEIKN W+TH+K+K
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRK 115          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.925e-46
Identity = 78/115 (67.83%), Postives = 96/115 (83.48%), Query Frame = 1
Query:   55 MGRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            MGR+PCCEK    +G WT EED  L+A+I+ HG   WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNF+ +E++ I+ LH +LGN+WS IAARLPGRTDNEIKN W+TH+++K
Sbjct:    1 MGRSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRK 115          
The following BLAST results are available for this feature:
BLAST of CX296572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB4_ORYSJ3.053e-6288.98Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
MYB1_MAIZE8.905e-5465.77Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
MYB4_ARATH3.624e-4771.30Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB3_ARATH8.073e-4768.70Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB1_HORVU1.377e-4672.17Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB08_ANTMA1.377e-4670.43Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MYBP_MAIZE3.068e-4670.43Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB30_ANTMA5.232e-4670.43Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB6_ARATH6.834e-4668.70Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB38_MAIZE8.925e-4667.83Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05146C04SK FerrChloL1 Citrus clementina cDNA clone C05146C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296572 ID=CX296572; Name=CX296572; organism=Citrus clementina; type=EST; length=741bp
CCGGGCTGCAGATTCGGCCGAGGAGTACTCCACTACTTTGAAAGAATTAA
CAAGATGGGGAGGGCTCCCTGCTGTGAGAAGATGGGATTGAAGAAGGGGC
CATGGACTCCTGAAGAAGATAGAATTTTAATCGCCCACATCAAAAAACAC
GGCCATCCCAATTGGCGTGCGTTACCAAAGCAAGCCGGTTTGTTGAGATG
TGGAAAGAGTTGCAGACTCCGATGGATAAATTACTTGAGGCCTGATATTA
AGAGGGGAAACTTCAGCAAAGAAGAAGAGGAAACTATCATCAACTTGCAT
GACATGTTGGGGAATAGGTGGTCAGCTATCGCAGCAAGGTTACCAGGAAG
GACAGATAATGAGATTAAAAACGTGTGGCACACGCACTTGAAGAAGAAAG
CAGCAGCAGTACTGAAGCAAAACCAGAAGGCCAATACTAATACTAATAAT
AATAATAATTCGGATGATCACAAACAAAACTCTAAAGCAACAACAGCTCA
TGATCATCAGTCTGCAGAATCTGCAATGTCTCCCCAGGCATCATCTTCCA
GTGATGAGCTCTCCTCGGTCACTACTGGAGAAACAAATAATAATAATAAT
AGTGATCGGTACTGCATGGATAAGTATGTGAAAGGTGATCATGAGCAAAA
TGTTGACTCGTTTGAAAGTTTTCCTGTGATTGATGAAAGCTTCTGGACAG
ACACCAGCTTATCTGAAAATTTCAGCATTTGACATCAGATT
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