CX296573

Overview
NameCX296573
Unique NameCX296573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296573_ssr80 microsatellite CX296573_ssr80:80..91. BLAST: Citrus ESTs to Prunus persica proteins V1
CX296573_ssr554 microsatellite CX296573_ssr554:554..565. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11942 contig Ccv1_Contig11942:283..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296573 vs. ExPASy Swiss-Prot
Match: RSSA_SOYBN (40S ribosomal protein SA OS=Glycine max PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.772e-16
Identity = 49/103 (47.57%), Postives = 57/103 (55.34%), Query Frame = -1
Query:  371 LLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYSMNLTSGE-QWPSQIADGGWAGGEVQKPIPVVPYFPEAAPAATVPLGGDGW 676
            LLARMVLQMRGTIRPG KWDVMVDLFFYR              A+DYA  +++    + + QWP  I D  W+   V +PIP VP     APA      G  W
Sbjct:  184 LLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAVDYAITDFNAGAIAADGQWPGTI-DQSWSDA-VPQPIPAVPGVNWGAPAEAPAAAGGDW 284          
BLAST of CX296573 vs. ExPASy Swiss-Prot
Match: RSSA_CICAR (40S ribosomal protein SA OS=Cicer arietinum GN=RAP40 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 50/94 (53.19%), Postives = 58/94 (61.70%), Query Frame = -1
Query:  398 LLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYSMN-LTSGEQWPSQIADGGWAGGEVQKPIPVVPYFPEAAPAA 676
            LLARMVLQMRGTIRPG KWDVMVDLFFYR              A DYA A+++++ + S  QWP+ I D  W    V +PIP VP    AAP A
Sbjct:  180 LLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDEVAAPDYAIADFNVSAIPSDGQWPAAI-DQPW-NDAVPQPIPAVPAVNWAAPEA 271          
BLAST of CX296573 vs. ExPASy Swiss-Prot
Match: RSSA_VITVI (40S ribosomal protein SA OS=Vitis vinifera GN=GSVIVT00034021001 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 50/111 (45.05%), Postives = 59/111 (53.15%), Query Frame = -1
Query:  371 LLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAI-DYATAEY---SMNLTSGEQWPSQIADGGWAGGEVQ--KPIPVVP--YFPEAAP-AATVPLGGDGW 676
            LLARMVLQMR TI PGHKWDVMVDLFFYR              A  DY   +Y   ++    G  W + I D    G +V    PIP VP   + +AAP  + VP+  DGW
Sbjct:  177 LLARMVLQMRRTIAPGHKWDVMVDLFFYREPEEPKEQEGDEVVAAPDYGITDYQATALGGLGGGDWGAPITDAPQWGADVPAVAPIPAVPGSNWGDAAPMPSAVPIATDGW 287          
BLAST of CX296573 vs. ExPASy Swiss-Prot
Match: RSSA_DAUCA (40S ribosomal protein SA OS=Daucus carota GN=179B PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 48/136 (35.29%), Postives = 54/136 (39.71%), Query Frame = -1
Query:  269 LLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYSMNLTSGEQWPSQIADGGWAGGEVQKPIPVVPYFPEAAPAATVPLGGDGWXXXXXXXXXXXXXXXXXXXXXXXVSAAPQPTGWE 676
            LLARMVLQMRG I  GHKW+VMVDLFFYR                DY     +  +   +QW + I D  W G  VQ   P     P        P+ GDGW                           P PTGWE
Sbjct:  177 LLARMVLQMRGVISQGHKWEVMVDLFFYREPEETKDQEEEDLPVGDYVADYAAAPIGGADQW-NAIPDAQWGGDVVQ---PANSAVPAGTWTDAGPIAGDGWDAAAAPPVPGAVGLD-----------VPAPTGWE 297          
BLAST of CX296573 vs. ExPASy Swiss-Prot
Match: RSSA1_ARATH (40S ribosomal protein Sa-1 OS=Arabidopsis thaliana GN=RPSaA PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11
Identity = 48/107 (44.86%), Postives = 53/107 (49.53%), Query Frame = -1
Query:  371 LLARMVLQMRGTIRPGHKWDVMVDLFFYR-XXXXXXXXXXXXXXAIDYA---TAEYSMNLTSGEQW-PSQIADGGWAGGEVQKPIPVVPYFPEAAPAATVPLGGDGW 676
            LLARMVLQMRGTI  G KWDVMVDLFFYR                 +Y      EY M    G+QW  +QI D  W  GE Q PI   P     + +A  P  G GW
Sbjct:  181 LLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGM--VGGDQWTTAQIPDAAWP-GEGQAPISAAPAAASWSDSAAAPADG-GW 283          
BLAST of CX296573 vs. ExPASy Swiss-Prot
Match: RSSA2_ARATH (40S ribosomal protein Sa-2 OS=Arabidopsis thaliana GN=RPSaB PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 44/104 (42.31%), Postives = 54/104 (51.92%), Query Frame = -1
Query:  380 LLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYSMNLTSGEQW-PSQIADGGWAGGEVQKPIPVVPYFPEAA----PAATVPLGG 676
            LLARMVLQMRGTI    KWDVMVDLFFYR                + A  +    +  G+QW  +QI+D  W+ GEV++PI   P           AA+VP  G
Sbjct:  182 LLARMVLQMRGTILAAQKWDVMVDLFFYREPEEAKQEGD------EEAEVQADYGMVGGDQWTTAQISDAAWS-GEVEQPISAAPAVGVTVAAGWEAASVPAAG 278          
BLAST of CX296573 vs. ExPASy Swiss-Prot
Match: RSSA_BRANA (40S ribosomal protein SA OS=Brassica napus GN=LRP PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 46/101 (45.54%), Postives = 51/101 (50.50%), Query Frame = -1
Query:  398 LLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYSM---NLTSGEQW-PSQIADGGWAGGEVQKPIPVVP----YFPEAAPAA 676
            LLARMVLQMRGTIRP  KWDVMVDLFFYR                    AE+ +       G+QW  + I D  W  GE Q PI   P    +   AAPAA
Sbjct:  178 LLARMVLQMRGTIRPAQKWDVMVDLFFYREPEETKPEDEDEVA----PQAEFGLPAPEYGGGDQWTTAAIPDAAWP-GEAQAPISAAPAAGSWNDSAAPAA 273          
The following BLAST results are available for this feature:
BLAST of CX296573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RSSA_SOYBN4.772e-1647.5740S ribosomal protein SA OS=Glycine max PE=2 SV=1[more]
RSSA_CICAR3.093e-1553.1940S ribosomal protein SA OS=Cicer arietinum GN=RAP... [more]
RSSA_VITVI3.781e-1345.0540S ribosomal protein SA OS=Vitis vinifera GN=GSVI... [more]
RSSA_DAUCA1.437e-1235.2940S ribosomal protein SA OS=Daucus carota GN=179B ... [more]
RSSA1_ARATH1.588e-1144.8640S ribosomal protein Sa-1 OS=Arabidopsis thaliana... [more]
RSSA2_ARATH2.075e-1142.3140S ribosomal protein Sa-2 OS=Arabidopsis thaliana... [more]
RSSA_BRANA7.883e-1145.5440S ribosomal protein SA OS=Brassica napus GN=LRP ... [more]
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Properties
Property NameValue
Genbank descriptionC05146C06SK FerrChloL1 Citrus clementina cDNA clone C05146C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296573 ID=CX296573; Name=CX296573; organism=Citrus clementina; type=EST; length=676bp
GAGGTTTTTTTTTTTTTATTTTTTTGATAGATAAATTTAGATGACTCGGA
CAAATTTAACATACCAAAATATTAGGTACCATCATCATCATCAACAAAAC
CTAATTCTCAATGTCTAGAACTATAACTGTGCCAAAAAAAAAAGATAAAA
AAAAAAAAAAGAACAAAGCCATAGTACTTTGCCGAACATAAAGAAGTTCA
AACTAAAACATAGTTGTAGAAGAAAAGGCTTGAAATGATTGAAACAAAAC
TCTCTCAAAATAAAATTATTCCCAGCCAGTAGGTTGTGGGGCAGCAGAAA
CATCAGGAACTGTAACTGCTGCCATTGGTGGTGCCGTAACTGCTGCCATT
GGTGGTGCCGGCACTGCATCCCATCCATCCCCACCCAAAGGAACTGTAGC
TGCTGGTGCTGCTTCTGGGAAATAGGGAACAACAGGAATGGGCTTCTGAA
CTTCACCACCCGCCCACCCACCATCAGCAATTTGGGAAGGCCATTGCTCA
CCACTGGTAAGATTCATGCTGTACTCTGCTGTAGCATAATCAATAGCAGC
AGTTTCTTCTTCTTCAGCCTGCTTGGTTTCTTCTGGCTCCCTGTAGAAGA
ACAGATCGACCATCACATCCCACTTGTGGCCAGGACGAATAGTGCCGCGC
ATCTGGAGAACCATTCTAGCCAAAAG
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