CX296574

Overview
NameCX296574
Unique NameCX296574
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length572
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9414 contig Ccv1_Contig9414:382..953. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX296574 vs. ExPASy Swiss-Prot
Match: DHAR1_ARATH (Glutathione S-transferase DHAR1, mitochondrial OS=Arabidopsis thaliana GN=DHAR1 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.780e-47
Identity = 93/148 (62.84%), Postives = 112/148 (75.68%), Query Frame = -3 
Query:  130 KLDEKCFPDSDVITQSLEEKYPDPPLRTPPEKASVGSKIFSMFIGFLKSKDPSDGSEQALLNELNSFNDYIKEN-GPFIIGGKVSAADLSLGPKFYHLEIALGHYKNWSVPDSLPHVKSYMKTIFSMDSFIKTRALPDDVIVGWRPKV 570
            K+D+K   DSDVI   LEEKYPDPPL+TP E ASVGS IF  F  FLKSKD +DGSE ALL EL +  +++K + GPFI G +VSA DLSL PK YHL++ALGH+K+WSVP+S PHV +YMKT+FS+DSF KT+     VI GW PKV
Sbjct:   64 KIDDKWVTDSDVIVGILEEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEKYVISGWAPKV 211
The following BLAST results are available for this feature:
BLAST of CX296574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DHAR1_ARATH3.780e-4762.84Glutathione S-transferase DHAR1, mitochondrial OS=... [more]
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Properties
Property NameValue
Genbank descriptionC05146C07SK FerrChloL1 Citrus clementina cDNA clone C05146C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296574 ID=CX296574; Name=CX296574; organism=Citrus clementina; type=EST; length=572bp
GAGGCCCCGTGCCGAATTCGGCACGATTTTACCACTTAACCTCAGAAAGG
GAAGTTGACAGGATATATATTATACCCAAAGAGTTCATAGGGAAAGAAAA
GGAGCAATGACAAAAAGCTACTAACCAAAGACCTTTGGCCGCCAACCAAC
AATCACATCATCTGGGAGTGCTCTTGTTTTGATAAATGAATCCATTGAGA
AAATTGTCTTCATGTAAGACTTCACGTGTGGAAGTGAATCTGGAACCGAC
CAATTTTTATAATGCCCCAGAGCAATTTCTAGATGATAGAACTTGGGTCC
CAGGGACAAATCTGCAGCAGAAACCTTTCCCCCAATGATAAAAGGGCCAT
TTTCCTTGATGTAATCATTGAATGAATTTAGCTCATTCAGCAATGCCTGC
TCAGATCCATCACTGGGGTCTTTGCTTTTCAGAAAACCAATAAACATAGA
GAAGATCTTTGATCCGACTGAAGCCTTCTCAGGCGGGGTTCGTAGTGGCG
GATCTGGGTATTTTTCTTCCAGAGATTGTGTGATAACATCTGAATCTGGA
AAGCACTTCTCATCCAGTTTTA
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