CX296580

Overview
NameCX296580
Unique NameCX296580
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12003 contig Ccv1_Contig12003:125..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296580 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.355e-15
Identity = 58/158 (36.71%), Postives = 75/158 (47.47%), Query Frame = 3
Query:    3 IQWVRDQALGDPWLRDYADL-SKCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVGLVLNQPFFGGVQRTESEKRMIDDKLCPLSATDLMWDLSLPKGADRDHEYCNPIASVETNDKIGRLPSC----FVGGREGDPLIDRQKELSKMLEARGVHV 461
            ++WV  Q    P++R   D  ++ FL G SSGG IA+H  +RA D        VK+ G +L    FGG +RTESE+R+       L   D  W   LP+ ADRDH  CNP        ++G LP       V G   D   DRQ   +  L   G HV
Sbjct:  173 LKWVMSQ----PFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAAD------EGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFG--PNGRRLGGLPFAKSLIIVSGL--DLTCDRQLAYADALREDGHHV 316          
BLAST of CX296580 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.220e-13
Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = 3
Query:    3 IQWVRDQALGDPWLRDYADLS-KCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVGLVLNQPFFGGVQRTESEKRMIDDKLCPLSATDLMWDLSLPKGADRDHEYCNP 329
            ++WV   +    WLR   D   + FL G SSGG I ++  +RA++      S + ++G +L  P FGG +RTESEKR+       +   D  W   LP+G DR+H  C+P
Sbjct:  164 LKWVNSSS----WLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE------SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSP 263          
BLAST of CX296580 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 3
Query:    3 IQWVRDQALGDPWLRDYADLSK-CFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVGLVLNQPFFGGVQRTESEKRMIDDKLCPLSATDLMWDLSLPKGADRDHEYCNP 329
            + WV+ +     WL+   D +   +L G SSGG IA++  +RA +        VK++G +L  P FGG +RT+SEK +       +   D  W   LP+G DRDH  CNP
Sbjct:  166 LNWVKSRV----WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATN------EGVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNP 265          
BLAST of CX296580 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 41/112 (36.61%), Postives = 58/112 (51.79%), Query Frame = 3
Query:    3 IQWVRDQALGDPWLRDYADLS-KCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVGLVLNQPFFGGVQRTESEKRMIDDKLCPLSATDLMWDLSLPKGADRDHEYCNPIA 335
            + WV  ++    WL+   D     FL G SSGG IA++  LRA +      S + ++G +L  P FGG +RTESEK +       +   D  W   LP+G DR+H  CNP +
Sbjct:  166 LNWVNSRS----WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE------SGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFS 267          
The following BLAST results are available for this feature:
BLAST of CX296580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GID1_ORYSJ1.355e-1536.71Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L3_ARATH8.220e-1336.36Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH4.080e-1236.36Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH4.080e-1236.61Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC05146D02SK FerrChloL1 Citrus clementina cDNA clone C05146D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296580 ID=CX296580; Name=CX296580; organism=Citrus clementina; type=EST; length=586bp
CCATCCAGTGGGTCCGCGACCAGGCTCTTGGTGACCCGTGGCTGAGAGAT
TACGCCGATCTATCCAAGTGTTTTCTGATGGGCTCCAGCTCTGGCGGCGG
CATCGCTTACCATGCCGGGTTACGTGCATTGGACTTGGATGCTGATCATC
TTTCGCCGGTGAAGATCGTAGGGCTCGTGCTCAATCAGCCATTTTTCGGT
GGGGTCCAGAGGACTGAATCGGAGAAAAGAATGATCGACGACAAGCTCTG
TCCGTTGAGTGCAACGGATCTCATGTGGGACCTGTCGTTGCCGAAGGGTG
CGGATCGCGATCATGAATATTGCAATCCGATCGCAAGTGTGGAAACTAAC
GATAAGATCGGACGGCTGCCAAGTTGTTTTGTGGGAGGACGCGAGGGGGA
CCCGTTGATCGACAGACAAAAAGAGTTATCAAAAATGTTAGAGGCGCGCG
GAGTGCACGTGGTGCCACAGTTTGACGATGGTTACCACGCATGTGAGCTG
TTTGATCCTTCCAAAGCCGAAGCCCTGTACAAGGCTGTCCAGGAATTTGT
TAACGATGTATGTGCCCGTCAGCCTGAACATAATAA
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