CX296612

Overview
NameCX296612
Unique NameCX296612
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9458 contig Ccv1_Contig9458:629..1285. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296612 vs. ExPASy Swiss-Prot
Match: DHR12_BOVIN (Dehydrogenase/reductase SDR family member 12 OS=Bos taurus GN=DHRS12 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.313e-31
Identity = 74/148 (50.00%), Postives = 93/148 (62.84%), Query Frame = -3 
Query:  209 PRVITVSSGGMYTAHL-TDDLEFNSGSFDGMEQYARNKRVQVALTEKWSEMYKEKGIGFYSMHPGWAETPGVAKSMPSFNERLAGNLRTSEEGADTVLWLALQPKEKL-VSGSFYFDRAEAPKHLKFAATAASHARIDPIVDVLRSMA 646
            PRVITVSSGGM    L TDD +    +FDG   YA+NKR QV LTE+W+  +    I F  MHPGW +TPGV  SMP F+ RL   LR+  +GADTVLWLAL P      SG F+ DR  AP HL  A T++S A  + ++++L  +A
Sbjct:  168 PRVITVSSGGMLVQKLNTDDPQSERTAFDGTMVYAQNKRQQVVLTERWARAHP--AIHFSCMHPGWVDTPGVRLSMPGFHARLGARLRSEAQGADTVLWLALAPAATAQPSGCFFQDRKPAPTHLPLARTSSSPAEEEKLIEILEELA 313
[Close]
BLAST of CX296612 vs. ExPASy Swiss-Prot
Match: DHR12_HUMAN (Dehydrogenase/reductase SDR family member 12 OS=Homo sapiens GN=DHRS12 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.671e-29
Identity = 69/148 (46.62%), Postives = 92/148 (62.16%), Query Frame = -3 
Query:  209 PRVITVSSGGMYTAHL-TDDLEFNSGSFDGMEQYARNKRVQVALTEKWSEMYKEKGIGFYSMHPGWAETPGVAKSMPSFNERLAGNLRTSEEGADTVLWLALQPKEKL-VSGSFYFDRAEAPKHLKFAATAASHARIDPIVDVLRSMA 646
            PRVITVSSGGM    L T+DL+     FDG   YA+NKR QV LTE+W++ +    I F SMHPGWA+TPGV ++MP F+ R    LR+  +GADT+LWLAL        SG F+ DR     HL  A  ++S A  + ++++L  +A
Sbjct:  168 PRVITVSSGGMLVQKLNTNDLQSERTPFDGTMVYAQNKRQQVVLTERWAQGHP--AIHFSSMHPGWADTPGVRQAMPGFHARFGDRLRSEAQGADTMLWLALSSAAAAQPSGRFFQDRKPVSTHLPLATASSSPAEEEKLIEILEQLA 313
The following BLAST results are available for this feature:
BLAST of CX296612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DHR12_BOVIN1.313e-3150.00Dehydrogenase/reductase SDR family member 12 OS=Bo... [more]
DHR12_HUMAN4.671e-2946.62Dehydrogenase/reductase SDR family member 12 OS=Ho... [more]
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Properties
Property NameValue
Genbank descriptionC05146G12SK FerrChloL1 Citrus clementina cDNA clone C05146G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296612 ID=CX296612; Name=CX296612; organism=Citrus clementina; type=EST; length=657bp
CAATTATTTCAGAAAAACATATTTTTAACAATAAATAATTTGTTTTAAGC
AATTACAACCACATTGGATGAAGGATATTCTCAGCAAACACTACTGCCAA
ACCTACATTCTTCAACTTTAACTTGGTAAATCAAATTTACAATTCAAATT
TCTATGAAGACATCAAAAAGTAGACAATATTGATAGCTTTAATTCATTAA
CGAAGGTTGGCCATGGAACGAAGAACATCCACAATGGGGTCAATTCTTGC
ATGAGAGGCAGCAGTAGCCGCAAACTTAAGGTGTTTAGGTGCTTCAGCCC
TATCAAAATAAAATGAACCTGATACTAATTTCTCTTTTGGCTGTAAAGCC
AACCAAAGGACTGTATCTGCACCTTCCTCACTCGTTCGAAGATTCCCGGC
AAGCCTTTCATTAAAACTAGGCATACTCTTGGCCACGCCAGGTGTCTCAG
CCCACCCTGGGTGCATTGAGTAGAACCCAATCCCCTTCTCCTTGTACATT
TCAGACCACTTTTCAGTTAGTGCCACCTGGACTCGCTTGTTTCGAGCATA
TTGTTCCATCCCATCAAAGCTTCCACTGTTAAACTCTAGATCATCAGTTA
AGTGAGCTGTATACATTCCTCCAGAGGAAACTGTGATCACTCGAGGGGGG
GCCCGGT
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