CX296620

Overview
NameCX296620
Unique NameCX296620
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10412 contig Ccv1_Contig10412:182..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX296620 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.158e-17
Identity = 60/166 (36.14%), Postives = 70/166 (42.17%), Query Frame = 1 
Query:   10 WTKRRRSKRPRTDESPPLPPAVAAPTEEEYMALCLIMLARGTTTANTAPAERTPSLAPEQRPQDQFPEPPSLKLSYKCSVCNKAFSSYQALGGHKASHR------------KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHECSICHKSFPTGQALGGHKR 471
            W KR+RS+R R+              EEE +ALCL+ML+RG      AP              + F  P  +   +KCSVC K+FSSYQALGGHK SHR                                              H CSIC K FPTGQALGGHKR
Sbjct:   43 WAKRKRSRRQRS--------------EEENLALCLLMLSRGGKQRVQAPQP------------ESFAAP--VPAEFKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKR 180
The following BLAST results are available for this feature:
BLAST of CX296620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT1.158e-1736.14Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionC05146H10SK FerrChloL1 Citrus clementina cDNA clone C05146H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296620 ID=CX296620; Name=CX296620; organism=Citrus clementina; type=EST; length=473bp
GAAGACTCATGGACTAAAAGAAGGCGCTCAAAACGACCCCGTACCGACGA
GTCCCCACCACTGCCACCAGCAGTAGCAGCTCCCACAGAAGAAGAGTACA
TGGCTCTCTGTCTCATCATGCTCGCCCGCGGTACCACCACCGCCAACACC
GCTCCAGCCGAAAGAACCCCATCCCTGGCGCCGGAACAGCGGCCGCAGGA
TCAGTTCCCGGAGCCGCCAAGTTTGAAACTTTCTTACAAGTGCAGTGTGT
GCAACAAGGCTTTCTCTTCTTACCAGGCCCTTGGTGGGCACAAAGCCAGC
CACCGCAAGAACGCTGCTGACGCCTCGGCTTCTCCCAACGCCGCAGCCGC
CAGTGACGTCACCCCACCACCGTCAGCAACGGCGAGCAGCGGAAGCGGCG
GTAGGACCCACGAGTGCTCTATTTGTCACAAGTCTTTTCCCACTGGACAA
GCTCTAGGAGGCCACAAGCGGTG
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