CX296627

Overview
NameCX296627
Unique NameCX296627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296627 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.603e-24
Identity = 83/211 (39.34%), Postives = 102/211 (48.34%), Query Frame = 3
Query:   93 EVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQMRQNMNQLRASYPAANLSSSPVRKPXXXXXXXXXXXXXXXXXXXXXXFTKRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWDGAMYIEQEQMVA 725
            ++  S+DP+MLSQL  +S KQ+      S              A     ++ +SP+                         F KRSQSFIDRG   + A  S++S   T   S LSDW SPDGKLDWGVQGDEL+KL+KSASF FR  +     T       +   EPDVSWVNSLVKD    G  +F            A + EQEQMVA
Sbjct:  423 DLLGSVDPAMLSQLHALSLKQAGDMPAYSSM------------ADTTQMHMPTSPMVGGANTAFGLDHSMAKAIMSSRASAFAKRSQSFIDRGG-RAPAARSLMSPATTGAPSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQSAMPVAT------HAAAAEPDVSWVNSLVKDGHAAGD-IF------------AQWPEQEQMVA 601          
BLAST of CX296627 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.411e-23
Identity = 82/230 (35.65%), Postives = 105/230 (45.65%), Query Frame = 3
Query:   63 RIGDVN-RNLDEVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQMRQNMNQLRASYPAANLSSSPVRKPXXXXXXXXXXXXXXXXXXXXXXFTKRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPE------GQGLFGA---EKQQYNPWDGAMYIEQEQMV 722
            R+GD+   NL+E F S D + + QLQ  S+                   MN     YP     SSPVR+P                      F KRS SF                  P   +SN+SDW SP+GKL+WG+Q DELNKL++SASFG   NN  + +     P+    DEPDVSWVNSLVK+  PE      G  + GA   +K +   W   MYI+ EQ +
Sbjct:  412 RLGDLKPSNLEETFGSYDSASVMQLQSPSR----------------HSQMNH----YP-----SSPVRQPPPHGFESSAAMAAAVMNARSSAFAKRSLSF-----------------KPAPVASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNNNNSVS----RPARDYSDEPDVSWVNSLVKENAPERVNERVGNTVNGAASRDKFKLPSWAEQMYIDHEQQI 595          
BLAST of CX296627 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.746e-20
Identity = 75/200 (37.50%), Postives = 97/200 (48.50%), Query Frame = 3
Query:  138 GMSQKQSTPTQLQSPT-GLQMRQNMNQLRASYPAANLSSSPVRKPXXXXXXXXXXXXXXXXXXXXXX-FTKRSQSFIDRGAVTSRAGLSMVSNPPTMRS--SNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGA-EKQQYNPWDGAMYIEQEQMV 722
            G + +++  + + SP+   QM QNMNQ    YP     SSPVR+P                       F KRS SF                 P T  +  SNLSDW SP+GKL+WG++G+ELNK+++S SFG   NN           +    DEPDVSWVNSLVKD T   +  FG  E+ +   W   MY E+EQ V
Sbjct:  411 GNNVEETFGSYVSSPSRNSQMGQNMNQ---HYP-----SSPVRQPPSQHGFESSAAAAVAVMKARSTAFAKRSLSF----------------KPATQAAPQSNLSDWGSPNGKLEWGMKGEELNKMRRSVSFGIHGNN-------NNNAARDYRDEPDVSWVNSLVKDSTVVSERSFGMNERVRIMSWAEQMYREKEQTV 579          
BLAST of CX296627 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.870e-14
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  342 KRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWDGAMYIEQEQMVA 725
            +RSQSFI+R       GL+      +M ++ L+DW S DGKLDW VQGDEL KL+KS SF  R+  + +          + ++EPDVSWV  LVK+  P+       E +    W    Y+E EQ VA
Sbjct:  498 QRSQSFIERNN-----GLNHHPAISSMTTTCLNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPN----EGTGLEEPDVSWVEPLVKE--PQ-------ETRLAPVWMEQSYMETEQTVA 607          
BLAST of CX296627 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.527e-11
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 3
Query:  339 TKRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQ 647
            T RS S  D G   +RA   +V +P    SS+ S W SP G  DWGV G+EL KL++S+SF  RS                  D+PD+SWV++LVK+  PE Q
Sbjct:  623 TMRSLSSRDLGPSAARAS-GVVGSP---LSSSWSKWGSPSGTPDWGVNGEELGKLRRSSSFELRSGG----------------DDPDLSWVHTLVKESPPEKQ 705          
The following BLAST results are available for this feature:
BLAST of CX296627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
C3H33_ORYSJ2.603e-2439.34Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H29_ARATH6.411e-2335.65Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H47_ARATH1.746e-2037.50Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H66_ARATH1.870e-1440.63Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H24_ORYSJ2.527e-1141.75Zinc finger CCCH domain-containing protein 24 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionC05801A05SK FerrChloL1 Citrus clementina cDNA clone C05801A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296627 ID=CX296627; Name=CX296627; organism=Citrus clementina; type=EST; length=757bp
AGATTCGGCCGAGGGAGATCTCTAGTCTCTCCTCCCCATCTTCTTGGAGC
AAGGAATACAGTAGGATTGGAGATGTGAATCGAAACCTTGACGAAGTTTT
CGAATCTCTTGATCCTTCTATGTTGTCTCAGTTGCAGGGAATGTCACAGA
AACAATCAACGCCAACTCAGTTGCAATCTCCAACCGGGCTTCAAATGCGC
CAAAACATGAACCAACTTCGTGCAAGCTATCCAGCTGCCAACCTCTCATC
CTCTCCAGTGAGAAAACCTTCATCATTTGGGTTTGATTCTTCGGCTGCAG
TGGCAGCTGCAGTGATGAATTCAAGGTCTTCTGCCTTTACAAAGCGAAGC
CAGAGTTTTATTGATCGTGGAGCAGTGACCAGTCGTGCTGGTCTCAGCAT
GGTTTCTAACCCTCCGACTATGAGATCCTCTAATCTATCAGATTGGAGCT
CCCCTGATGGGAAACTGGATTGGGGAGTTCAAGGAGATGAGCTGAACAAA
CTTAAGAAGTCAGCTTCATTCGGGTTTCGTAGCAACAATATAACAACCCC
AACAACAAAAGGCTTCACTCCATCATCATCGAATGTTGATGAGCCAGATG
TGTCCTGGGTTAATTCCTTGGTGAAAGATGTTACGCCAGAAGGACAGGGA
TTGTTTGGTGCAGAGAAGCAGCAATACAATCCATGGGATGGAGCAATGTA
CATAGAACAGGAGCAGATGGTGGCATAATGAAAACAGCTATGTGCTCCTA
CCTTATC
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