CX296627
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296627 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.603e-24 Identity = 83/211 (39.34%), Postives = 102/211 (48.34%), Query Frame = 3 Query: 93 EVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQMRQNMNQLRASYPAANLSSSPVRKPXXXXXXXXXXXXXXXXXXXXXXFTKRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWDGAMYIEQEQMVA 725 ++ S+DP+MLSQL +S KQ+ S A ++ +SP+ F KRSQSFIDRG + A S++S T S LSDW SPDGKLDWGVQGDEL+KL+KSASF FR + T + EPDVSWVNSLVKD G +F A + EQEQMVA Sbjct: 423 DLLGSVDPAMLSQLHALSLKQAGDMPAYSSM------------ADTTQMHMPTSPMVGGANTAFGLDHSMAKAIMSSRASAFAKRSQSFIDRGG-RAPAARSLMSPATTGAPSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQSAMPVAT------HAAAAEPDVSWVNSLVKDGHAAGD-IF------------AQWPEQEQMVA 601
BLAST of CX296627 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 6.411e-23 Identity = 82/230 (35.65%), Postives = 105/230 (45.65%), Query Frame = 3 Query: 63 RIGDVN-RNLDEVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQMRQNMNQLRASYPAANLSSSPVRKPXXXXXXXXXXXXXXXXXXXXXXFTKRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPE------GQGLFGA---EKQQYNPWDGAMYIEQEQMV 722 R+GD+ NL+E F S D + + QLQ S+ MN YP SSPVR+P F KRS SF P +SN+SDW SP+GKL+WG+Q DELNKL++SASFG NN + + P+ DEPDVSWVNSLVK+ PE G + GA +K + W MYI+ EQ + Sbjct: 412 RLGDLKPSNLEETFGSYDSASVMQLQSPSR----------------HSQMNH----YP-----SSPVRQPPPHGFESSAAMAAAVMNARSSAFAKRSLSF-----------------KPAPVASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNNNNSVS----RPARDYSDEPDVSWVNSLVKENAPERVNERVGNTVNGAASRDKFKLPSWAEQMYIDHEQQI 595
BLAST of CX296627 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.746e-20 Identity = 75/200 (37.50%), Postives = 97/200 (48.50%), Query Frame = 3 Query: 138 GMSQKQSTPTQLQSPT-GLQMRQNMNQLRASYPAANLSSSPVRKPXXXXXXXXXXXXXXXXXXXXXX-FTKRSQSFIDRGAVTSRAGLSMVSNPPTMRS--SNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGA-EKQQYNPWDGAMYIEQEQMV 722 G + +++ + + SP+ QM QNMNQ YP SSPVR+P F KRS SF P T + SNLSDW SP+GKL+WG++G+ELNK+++S SFG NN + DEPDVSWVNSLVKD T + FG E+ + W MY E+EQ V Sbjct: 411 GNNVEETFGSYVSSPSRNSQMGQNMNQ---HYP-----SSPVRQPPSQHGFESSAAAAVAVMKARSTAFAKRSLSF----------------KPATQAAPQSNLSDWGSPNGKLEWGMKGEELNKMRRSVSFGIHGNN-------NNNAARDYRDEPDVSWVNSLVKDSTVVSERSFGMNERVRIMSWAEQMYREKEQTV 579
BLAST of CX296627 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.870e-14 Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 3 Query: 342 KRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWDGAMYIEQEQMVA 725 +RSQSFI+R GL+ +M ++ L+DW S DGKLDW VQGDEL KL+KS SF R+ + + + ++EPDVSWV LVK+ P+ E + W Y+E EQ VA Sbjct: 498 QRSQSFIERNN-----GLNHHPAISSMTTTCLNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPN----EGTGLEEPDVSWVEPLVKE--PQ-------ETRLAPVWMEQSYMETEQTVA 607
BLAST of CX296627 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.527e-11 Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 3 Query: 339 TKRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQ 647 T RS S D G +RA +V +P SS+ S W SP G DWGV G+EL KL++S+SF RS D+PD+SWV++LVK+ PE Q Sbjct: 623 TMRSLSSRDLGPSAARAS-GVVGSP---LSSSWSKWGSPSGTPDWGVNGEELGKLRRSSSFELRSGG----------------DDPDLSWVHTLVKESPPEKQ 705 The following BLAST results are available for this feature:
BLAST of CX296627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296627 ID=CX296627; Name=CX296627; organism=Citrus clementina; type=EST; length=757bpback to top |