CX296628

Overview
NameCX296628
Unique NameCX296628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig668 contig Ccv1_Contig668:830..1537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GRHPR_HUMAN (Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 52/180 (28.89%), Postives = 86/180 (47.78%), Query Frame = -3
Query:  170 LGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 706
            LG IG  +A+RL+PFGV + + T R          Q+  ++                    + A+ +D +V   SL   T G+ NK F   MK+ ++ +NI+RG +++ + +   L SG +   G+DV   EP   N P+L  KN +I PH+G  T  +  +M+ +  +  L    G P+
Sbjct:  161 LGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTP------------------ELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPM 322          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GYAR_THEPD (Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 53/167 (31.74%), Postives = 81/167 (48.50%), Query Frame = -3
Query:  212 LGNIGVELAKRLRPFGVKIIA--TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKV 706
            LG IGV  AKRL  F VKI+    +R W   + +                         D+      +D+V   + L K+T  ++N+  L  MKK + L+N ARG ++D EA+   L+ G + G  +DV   EP  PN P+ KF NV++ PH+   T  + + MA++
Sbjct:  157 LGRIGVATAKRLSSFDVKILYYDIERRWDVETVIPNMEFT-------------------DLDTLLEKSDIVSIHVPLTKETYHLINEERLRKMKKTAYLINTARGPVVDTEALVKALKEGWIAGAALDVFEQEPLPPNHPLTKFDNVVLAPHIASATIEARQRMAEL 304          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GRHPR_MOUSE (Glyoxylate reductase/hydroxypyruvate reductase OS=Mus musculus GN=Grhpr PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = -3
Query:  218 LGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMA 706
            LG IG  +A+RL+PFGV + + T R          Q+  + +                   + A+ +D +V   SL   T G+ +K F   MK  ++ +NI+RG +++ E +   L SG +   G+DV   EP  P+ P+L  KN +I PH+G  T  +  +M+
Sbjct:  161 LGRIGQAIARRLKPFGVQRFLYTGRQPRPQEAAEFQAEFVPIA------------------QLAAESDFIVVSCSLTPDTMGLCSKDFFQKMKNTAIFINISRGDVVNQEDLYQALASGQIAAAGLDVTTPEPLPPSHPLLTLKNCVILPHIGSATYKTRNTMS 306          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GYAR_PYRKO (Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 54/165 (32.73%), Postives = 89/165 (53.94%), Query Frame = -3
Query:  209 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV 703
            G IG  +A+R R FG++I+   RS    ++       L  +   ++DL+ E             +D VV  + L K+T  ++N+  L  MKK ++LVNIARG ++D +A+   L+ G + G G+DV   EP+  N+ +   KNV++ PH+G  T  +   MA++V
Sbjct:  159 GRIGQAVARRARGFGMRILYYSRSRKPEAE-----KELGAEFRSLEDLLRE-------------SDFVVLAVPLTKETQYMINEERLRLMKKTAILVNIARGKVVDTKALMKALKEGWIAGAGLDVYEEEPY-YNEELFSLKNVVLAPHIGSATYGAREGMAELV 304          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 55/179 (30.73%), Postives = 88/179 (49.16%), Query Frame = -3
Query:  170 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 706
            LG IG E+A+R R FG+ +         H      +   A K G+     +E             AD++     L K+T G++NK  ++  KKG  L+N ARGG++D  A+   LE+GH+ G  +DV   EP   ++ ++    V+ TPH+G  T+ +  ++A  V +  LQ   G P+
Sbjct:  146 LGRIGSEIAQRARAFGMTV---------HVFDPFLTEERAKKIGVNSRTFEE---------VLESADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDEAALLEALENGHVAGAALDVFEVEP-PVDNKLVDHPLVIATPHLGASTKEAQLNVAAQVSEEVLQFAKGLPV 305          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GYAR_PYRAB (Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 53/175 (30.29%), Postives = 91/175 (52.00%), Query Frame = -3
Query:  179 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 703
            G IG  +AKR R F ++I+   R+     +       L  +   +D+L+ E             +D VV  + LNK+T  ++N+  L  MK+ ++L+N+ARG ++D +A+   L+ G + G G+DV   EP+  N+ +    NV++TPH+G  T  +   MAK+V +  +    G
Sbjct:  160 GRIGQAIAKRARGFDMRILYYSRTRKPEVE-----KELNAEFKPLDELLRE-------------SDFVVLAVPLNKETYHMINEERLKMMKRTAILINVARGKVIDTKALIKALKEGWIAGAGLDVYEEEPY-YNEELFSLDNVVLTPHIGSATFGAREGMAKLVAENLIAFKRG 315          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 46/179 (25.70%), Postives = 88/179 (49.16%), Query Frame = -3
Query:  170 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 706
            LG +G E+AKR +   + ++A     +       ++  + VK    D L+             + +DV+   +   K+T G++ K     MK G ++VN ARGG++D  A+   +++G +    +DV   EP  P++P+LK  NV+ TPH+   T  +  ++  ++ +  + +  G P+
Sbjct:  147 LGRVGFEVAKRCKALEMNVLAYDPFVSKE-----RAEQIGVKLVDFDTLL-------------ASSDVITVHVPRTKETIGLIGKGQFEKMKDGVIVVNAARGGIVDEAALYEAIKAGKVAAAALDVYEKEPPSPDNPLLKLDNVVTTPHIAASTREAQLNVGMIIAEDIVNMAKGLPV 307          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GYAR_PYRHO (Glyoxylate reductase OS=Pyrococcus horikoshii GN=gyaR PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 51/166 (30.72%), Postives = 88/166 (53.01%), Query Frame = -3
Query:  209 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV 706
            LG IG  +AKR + F ++I+   R+     +       L  +   ++DL+ E             +D VV  + L ++T  ++N+  L  MKK ++L+NIARG ++D  A+   L+ G + G G+DV   EP+  N+ + K  NV++TPH+G  +  +   MA++V
Sbjct:  158 LGRIGQAIAKRAKGFNMRILYYSRTRKEEVE-----RELNAEFKPLEDLLRE-------------SDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPY-YNEELFKLDNVVLTPHIGSASFGAREGMAELV 304          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 57/174 (32.76%), Postives = 87/174 (50.00%), Query Frame = -3
Query:  188 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT-EHSYRSMAKVVGDVALQL 706
            LG IG  +A R+  FG  +IA     A       +++ L ++    DDL+             + AD +   L    +TAG+++K  L+  K G ++VN ARGGL+D  A+A  + SGH+   G+DV  TEP   + P+ +   V++TPH+G  T E   R+   V   V L L
Sbjct:  149 LGRIGQLVAARIAAFGAHVIAYDPYVAP-----ARAAQLGIELMSFDDLL-------------ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEVALADAVRSGHVRAAGLDVFATEPC-TDSPLFELSQVVVTPHLGASTAEAQDRAGTDVAESVRLAL 303          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GYAR_PYRFU (Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 48/165 (29.09%), Postives = 89/165 (53.94%), Query Frame = -3
Query:  209 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV 703
            G IG  +A+R + F ++I+   R+  S ++       L  +   +++++ E             +D V+  + L K+T  ++N+  L  MK  ++LVNIARG ++D +A+   L+ G + G G+DV   EP+  N+ +    NV++TPH+G  T  +  +MA++V
Sbjct:  159 GRIGQAIARRAKGFNMRILYYSRTRKSQAE-----KELGAEYRPLEEVLKE-------------SDFVILAVPLTKETMYMINEERLKLMKPTAILVNIARGKVVDTKALIKALKEGWIAGAGLDVFEEEPY-YNEELFSLDNVVLTPHIGSATFEAREAMAELV 304          
The following BLAST results are available for this feature:
BLAST of CX296628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
GRHPR_HUMAN3.599e-1728.89Glyoxylate reductase/hydroxypyruvate reductase OS=... [more]
GYAR_THEPD1.786e-1631.74Glyoxylate reductase OS=Thermofilum pendens (strai... [more]
GRHPR_MOUSE1.786e-1629.88Glyoxylate reductase/hydroxypyruvate reductase OS=... [more]
GYAR_PYRKO3.047e-1632.73Glyoxylate reductase OS=Pyrococcus kodakaraensis G... [more]
SERA_BACSU5.198e-1630.73D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
GYAR_PYRAB6.788e-1630.29Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR ... [more]
SERA_ARCFU9.802e-1525.70D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]
GYAR_PYRHO9.802e-1530.72Glyoxylate reductase OS=Pyrococcus horikoshii GN=g... [more]
SERA_MYCLE2.852e-1432.76D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
GYAR_PYRFU2.852e-1429.09Glyoxylate reductase OS=Pyrococcus furiosus GN=gya... [more]

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Properties
Property NameValue
Genbank descriptionC05801A06SK FerrChloL1 Citrus clementina cDNA clone C05801A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296628 ID=CX296628; Name=CX296628; organism=Citrus clementina; type=EST; length=708bp
ACAACAATTGAGGTATAACGAATTTGCTTGTAATGGTCAACTGTCAAACA
GACAATGGTGGCTCTTTCAAAATGCCAGGAAAGATTAGTCAAAGGATAGC
ATGCCTATTAGTTTTGGCCGATGAAACAGATTCCTTAGAGTTGAATCAAT
TCACAAACTCTAGTCCTGTCAAAGGAGTCCCCGCATGAAGTTGAAGGGCA
ACGTCGCCAACAACCTTAGCCATTGATCTGTAAGAATGTTCGGTAACACC
TCCAACATGAGGTGTGATTAAAACATTCTTGAACTTTAGAATTGGGTCAT
TGGGATCAAACGGCTCTGTCCAAGCAACATCAATGCCCAAGCCTCCCAAG
TGGCCAGATTCGAGGTAATGAGCAATGGCCTCATAGTCTAAAAGACCTCC
TCGAGCAATATTCACCAGAAGAGAACCCTTTTTCATTGAAGATAGAAATG
ACTTGTTTACAATGCCAGCCGTCTGCTTATTTAAACTCAGGCAACAAACA
ACCACGTCGGCCATGCTAGCAAACTTAAAAATATCTTCATGACAACCCTT
CTCATCAACCAAATCATCAATGATCCCGTTTTTTACTGCAAGTGCACTAG
ATTGGCAAGAAACTTGAGAATGTGAAGCCCAACTCCTTTTTGTGGCAATA
ATTTTCACACCAAATGGTCGCAAGCGCTTTGCCAATTCAACCCCAATATT
TCCAAGCC
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