CX296634

Overview
NameCX296634
Unique NameCX296634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296634_ssr346 microsatellite CX296634_ssr346:346..363. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10970 contig Ccv1_Contig10970:8..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HSP82_ARATH (Heat shock protein 81-2 OS=Arabidopsis thaliana GN=HSP81-2 PE=1 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 2.142e-94
Identity = 171/226 (75.66%), Postives = 179/226 (79.20%), Query Frame = 3
Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            NDDEQY+WESQAGGSFTVTRDTSGE LGRGTK+ L+LKEDQLEYLEERRLKDL+KKHSEFISYPISLWI                                           VSHEW LVNKQKPIWMRKPEEI KEEYAAFYKSL+NDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDT+KKPNNIKLYVRRVFIMDNCE++IPEYLGFVKGIVDSEDLPL
Sbjct:  142 NDDEQYVWESQAGGSFTVTRDTSGETLGRGTKMVLYLKEDQLEYLEERRLKDLVKKHSEFISYPISLWIEKTIEKEISDDEEEEEKKDEEGKVEEVDEEKEKEEKKKKKIKEVSHEWDLVNKQKPIWMRKPEEINKEEYAAFYKSLSNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCEDIIPEYLGFVKGIVDSEDLPL 367          
BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HSP80_SOLLC (Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 2.798e-94
Identity = 172/226 (76.11%), Postives = 180/226 (79.65%), Query Frame = 3
Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            NDDEQY+WESQAGGSFTVTRDTSGE LGRGTK+ L+LKEDQLEYLEERRLKDLIKKHSEFISYPISLW+                                           VS+EWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKA+LFVPKRAPFDLFDT+KKPNNIKLYVRRVFIMDNC+ELIPEYL FVKGIVDSEDLPL
Sbjct:  142 NDDEQYVWESQAGGSFTVTRDTSGENLGRGTKMVLYLKEDQLEYLEERRLKDLIKKHSEFISYPISLWVEKTIEKEISDDEEEEEKKDEEGKVEEVDEEKEKEEKKKKKVKEVSNEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCDELIPEYLSFVKGIVDSEDLPL 367          
BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HSP83_ARATH (Heat shock protein 81-3 OS=Arabidopsis thaliana GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 343.584 bits (880), Expect = 6.233e-94
Identity = 169/226 (74.78%), Postives = 179/226 (79.20%), Query Frame = 3
Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            NDDEQY+WESQAGGSFTVTRDTSGE LGRGTK+ L+LKEDQ+EY+EERRLKDL+KKHSEFISYPISLWI                                           VSHEW LVNKQKPIWMRKPEEI KEEYAAFYKSL+NDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDT+KKPNNIKLYVRRVFIMDNCE++IPEYLGFVKGIVDSEDLPL
Sbjct:  142 NDDEQYVWESQAGGSFTVTRDTSGEALGRGTKMVLYLKEDQMEYIEERRLKDLVKKHSEFISYPISLWIEKTIEKEISDDEEEEEKKDEEGKVEEVDEEKEKEEKKKKKIKEVSHEWDLVNKQKPIWMRKPEEINKEEYAAFYKSLSNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCEDIIPEYLGFVKGIVDSEDLPL 367          
BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSJ (Heat shock protein 81-1 OS=Oryza sativa subsp. japonica GN=HSP81-1 PE=2 SV=2)

HSP 1 Score: 340.117 bits (871), Expect = 6.891e-93
Identity = 174/227 (76.65%), Postives = 179/227 (78.85%), Query Frame = 3
Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            NDDEQY+WESQAGGSFTVTRDTSGE LGRGTKITL+LK+DQLEYLEERRLKDLIKKHSEFISYPISLW                                             VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKA+LFVPKRAPFDLFDTRKK NNIKLYVRRVFIMDNCEELIPE+L FVKGIVDSEDLPL
Sbjct:  143 NDDEQYVWESQAGGSFTVTRDTSGEQLGRGTKITLYLKDDQLEYLEERRLKDLIKKHSEFISYPISLWTEKTTEKEISDDEDEEEKKDAEEGKVEDVDEEKEEKEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKLNNIKLYVRRVFIMDNCEELIPEWLSFVKGIVDSEDLPL 369          
BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSI (Heat shock protein 81-1 OS=Oryza sativa subsp. indica GN=HSP81-1 PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 6.891e-93
Identity = 174/227 (76.65%), Postives = 179/227 (78.85%), Query Frame = 3
Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            NDDEQY+WESQAGGSFTVTRDTSGE LGRGTKITL+LK+DQLEYLEERRLKDLIKKHSEFISYPISLW                                             VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKA+LFVPKRAPFDLFDTRKK NNIKLYVRRVFIMDNCEELIPE+L FVKGIVDSEDLPL
Sbjct:  143 NDDEQYVWESQAGGSFTVTRDTSGEQLGRGTKITLYLKDDQLEYLEERRLKDLIKKHSEFISYPISLWTEKTTEKEISDDEDEEEKKDAEEGKVEDVDEEKEEKEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKLNNIKLYVRRVFIMDNCEELIPEWLSFVKGIVDSEDLPL 369          
BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HSP83_ORYSJ (Heat shock protein 81-3 OS=Oryza sativa subsp. japonica GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 336.265 bits (861), Expect = 9.951e-92
Identity = 170/227 (74.89%), Postives = 179/227 (78.85%), Query Frame = 3
Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            NDDEQY+WESQAGGSFTVTRDTSGE LGRGTKITL+LK+DQLEYLEERRLKDL+KKHSEFISYPISLW                                             VSHEW+++NKQKPIW+RKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKK NNIKLYVRRVFIMDNCEELIPE+L FVKGIVDSEDLPL
Sbjct:  143 NDDEQYVWESQAGGSFTVTRDTSGEQLGRGTKITLYLKDDQLEYLEERRLKDLVKKHSEFISYPISLWTEKTTEKEISDDEDEEEKKDAEEGKVEDVDEEKEEKEKKKKKIKEVSHEWNVMNKQKPIWLRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKQNNIKLYVRRVFIMDNCEELIPEWLSFVKGIVDSEDLPL 369          
BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HSP83_IPONI (Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 9.951e-92
Identity = 167/226 (73.89%), Postives = 175/226 (77.43%), Query Frame = 3
Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            NDDEQYIWESQAGGSFTVTRD  GE LGRGTKITL LKEDQLEYLEERR+KDL+KKHSEFISYPI LW                                            VSHEW L+NKQKPIW+RKPEEITKEEYA+FYKSLTNDWE+HLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKK NNIKLYVRRVFIMDNCEELIPEYLGFVKG+VDS+DLPL
Sbjct:  147 NDDEQYIWESQAGGSFTVTRDVDGEQLGRGTKITLFLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKEEEGDIEEVDEDKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPL 372          
BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HSP82_ORYSJ (Heat shock protein 81-2 OS=Oryza sativa subsp. japonica GN=HSP81-2 PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 9.951e-92
Identity = 170/227 (74.89%), Postives = 179/227 (78.85%), Query Frame = 3
Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            NDDEQY+WESQAGGSFTVTRDTSGE LGRGTKITL+LK+DQLEYLEERRLKDL+KKHSEFISYPISLW                                             VSHEW+++NKQKPIW+RKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKK NNIKLYVRRVFIMDNCEELIPE+L FVKGIVDSEDLPL
Sbjct:  143 NDDEQYVWESQAGGSFTVTRDTSGEQLGRGTKITLYLKDDQLEYLEERRLKDLVKKHSEFISYPISLWTEKTTEKEISDDEDEEEKKDAEEGKVEDVDEEKEEKEKKKKKIKEVSHEWNVMNKQKPIWLRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKQNNIKLYVRRVFIMDNCEELIPEWLSFVKGIVDSEDLPL 369          
BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HSP81_ARATH (Heat shock protein 81-1 OS=Arabidopsis thaliana GN=HSP81-1 PE=1 SV=3)

HSP 1 Score: 328.946 bits (842), Expect = 1.589e-89
Identity = 166/227 (73.13%), Postives = 174/227 (76.65%), Query Frame = 3
Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            NDDEQY+WESQAGGSFTVTRD  GE LGRGTKITL LK+DQLEYLEERRLKDL+KKHSEFISYPI LW                                             VSHEW L+NKQKPIW+RKPEEITKEEYAAFYKSLTNDWE+HLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKK NNIKLYVRRVFIMDNCEELIPEYL FVKG+VDS+DLPL
Sbjct:  142 NDDEQYVWESQAGGSFTVTRDVDGEPLGRGTKITLFLKDDQLEYLEERRLKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDEDEPKKENEGEVEEVDEEKEKDGKKKKKIKEVSHEWELINKQKPIWLRKPEEITKEEYAAFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKLNNIKLYVRRVFIMDNCEELIPEYLSFVKGVVDSDDLPL 368          
BLAST of CX296634 vs. ExPASy Swiss-Prot
Match: HSP82_MAIZE (Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.313e-87
Identity = 161/230 (70.00%), Postives = 175/230 (76.09%), Query Frame = 3
Query:   36 NDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPL 713
            NDDEQY+WESQAGGSFTVT DT+GE LGRGTKITL LK+DQLEYLEERRLKDL+KKHSEFISYPI LW                                                VSHEW  +NKQKPIW+RKPEEIT++EYA+FYKSLTNDWE+HLAVKHFSVEGQLEFKAILFVP+RAPFDLFDTRKK NNIKLYVRRVFIMDNCEELIPE+LGFVKG+VDS+DLPL
Sbjct:  153 NDDEQYVWESQAGGSFTVTHDTTGEQLGRGTKITLFLKDDQLEYLEERRLKDLVKKHSEFISYPIYLWTEKTTEKEISDDEEEEDNKKEEEGDVEEVDDEDKDTKDKSKKKKKVKEVSHEWVQINKQKPIWLRKPEEITRDEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTRKKLNNIKLYVRRVFIMDNCEELIPEWLGFVKGVVDSDDLPL 382          
The following BLAST results are available for this feature:
BLAST of CX296634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 384
Match NameE-valueIdentityDescription
HSP82_ARATH2.142e-9475.66Heat shock protein 81-2 OS=Arabidopsis thaliana GN... [more]
HSP80_SOLLC2.798e-9476.11Heat shock cognate protein 80 OS=Solanum lycopersi... [more]
HSP83_ARATH6.233e-9474.78Heat shock protein 81-3 OS=Arabidopsis thaliana GN... [more]
HSP81_ORYSJ6.891e-9376.65Heat shock protein 81-1 OS=Oryza sativa subsp. jap... [more]
HSP81_ORYSI6.891e-9376.65Heat shock protein 81-1 OS=Oryza sativa subsp. ind... [more]
HSP83_ORYSJ9.951e-9274.89Heat shock protein 81-3 OS=Oryza sativa subsp. jap... [more]
HSP83_IPONI9.951e-9273.89Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=... [more]
HSP82_ORYSJ9.951e-9274.89Heat shock protein 81-2 OS=Oryza sativa subsp. jap... [more]
HSP81_ARATH1.589e-8973.13Heat shock protein 81-1 OS=Arabidopsis thaliana GN... [more]
HSP82_MAIZE3.313e-8770.00Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC05801B01SK FerrChloL1 Citrus clementina cDNA clone C05801B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296634 ID=CX296634; Name=CX296634; organism=Citrus clementina; type=EST; length=714bp
TTGGTTGCTGAGAAGGTTATTGTTACCGCCAAGCCAACGATGATGAGCAG
TACATCTGGGAGTCTCAGGCCGGTGGATCATTCACTGTTACCAGGGACAC
TTCTGGTGAGCTTCTTGGCCGCGGTACAAAGATCACTCTCCACCTCAAGG
AAGACCAACTTGAGTACCTTGAGGAGCGCCGTTTGAAGGATTTGATTAAG
AAGCACTCTGAGTTCATTAGTTACCCAATTTCCCTCTGGATTGAGAAGAC
CACTGAGAAGGAGATTTCTGATGATGAGGACGAGGAAGAAAAGAAGGATG
AGGAGGGTAAAGTTGAGGATGTTGATGAAGAGAAAGAGAAGGAAGAGAAG
AAGAAGAAGAAGATCAAGGAGGTGTCCCATGAGTGGTCATTGGTGAACAA
GCAGAAACCCATTTGGATGAGGAAACCTGAGGAGATTACAAAAGAAGAGT
ATGCTGCCTTCTACAAGAGTCTGACTAATGACTGGGAGGAGCACTTGGCT
GTGAAGCACTTCTCAGTTGAGGGCCAGCTTGAGTTTAAGGCTATCCTCTT
TGTTCCCAAGAGGGCACCTTTTGATCTCTTTGACACAAGGAAGAAGCCCA
ATAATATCAAGCTCTACGTCCGCCGTGTCTTCATCATGGACAACTGTGAG
GAGTTGATCCCCGAATACCTTGGTTTTGTTAAGGGTATTGTTGATTCCGA
GGATCTCCCTCTTA
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