CX296635

Overview
NameCX296635
Unique NameCX296635
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9482 contig Ccv1_Contig9482:34..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296635 vs. ExPASy Swiss-Prot
Match: RK34_ARATH (50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana GN=RPL34 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.300e-30
Identity = 66/86 (76.74%), Postives = 76/86 (88.37%), Query Frame = 3 
Query:  279 GLSLGLDFNSN-AGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGKRA 533
            GLS+  D +S  +G+  ++R+GLVVRAGKAALCQTKR+RSRKSLARTHGFRRRMRTTSGRA +KRRRAKGRW LCPKS P+SGKRA
Sbjct:   72 GLSIAFDLSSQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFRRRMRTTSGRATIKRRRAKGRWNLCPKSNPSSGKRA 157
[Close]
BLAST of CX296635 vs. ExPASy Swiss-Prot
Match: RK34_SPIOL (50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea GN=RPL34 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.039e-28
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 3 
Query:  279 GLSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGKRA 533
            GLSLGLD  SN GV  ++ +  VVRAGKAALC TKR+RSRKSLARTHGFR RM TTSGRA+LKRRRAKGR +LC K+ P+SGKRA
Sbjct:   66 GLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRKILCTKTNPSSGKRA 150
The following BLAST results are available for this feature:
BLAST of CX296635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RK34_ARATH1.300e-3076.7450S ribosomal protein L34, chloroplastic OS=Arabid... [more]
RK34_SPIOL6.039e-2874.1250S ribosomal protein L34, chloroplastic OS=Spinac... [more]
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Properties
Property NameValue
Genbank descriptionC05801B02SK FerrChloL1 Citrus clementina cDNA clone C05801B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296635 ID=CX296635; Name=CX296635; organism=Citrus clementina; type=EST; length=719bp
CCGAATTCGGCACGAGGGAAACAAAGGCTCTTCAAAAAGGGGGAAAAATA
ATGGCTTCATTGTCGATAACAACATCAATCCCACCACCATGGCTTACTAG
CAAAAGCACACATCACTCACGAAGAATTCCTTCTGCTTCTCTCATTCTGC
GGACGGGAAGAAGCTCTGTGTCGGTGAATGTTGCCGGCAACAACTCCTCA
CCATCTCGCCCTGGGCTTCTTCACTGCTCCTTTGTTTCCTCTTCTTTATG
TTCTTCCGCTTTTCATTCAGCTTTTTCAGGTCTATCCTTAGGGCTAGATT
TCAATTCTAATGCTGGGGTGCGAAAGGAGAAACGCCAGGGTCTGGTGGTG
AGGGCGGGGAAGGCTGCTCTGTGTCAAACTAAGCGGAATAGGTCTCGAAA
ATCCCTAGCTCGCACTCATGGCTTCCGCAGACGGATGAGAACCACTAGTG
GAAGAGCAATATTGAAGCGTCGAAGAGCCAAAGGACGGTGGGTACTTTGT
CCCAAGTCCTACCCCAATAGTGGGAAGCGTGCCTAACTACTCATTGTATT
CAGTTTCAGTAGGTGAATTTTAATATTCAATGTGGTTCGCAGATGATCTT
CTGAACCTGATCAGAAGCTTTGTTTGTTGTTCCATTTGGGCATCTGTTGT
ATTCAGTTAAATGAAATTCACATTGTTATCAAAAAAAACCTCGTGCCGAA
TTCGGCCCGAGGGGGGGCC
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