CX296642 | Citrus Genome Database

Overview


Name	CX296642
Unique Name	CX296642
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	609

Libraries


Library Name	Type
FerrChloL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig9507	contig	Ccv1_Contig9507:495..1104.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.507e-35
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = -2

Query:  180 LSRMETISK*RKRRRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 416
            + R +  S  R   RLPG+G+ TNIINGG+ECG   +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  246 IGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324

HSP 2 Score: 81.6481 bits (200), Expect = 8.507e-35
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = -1

Query:  412 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVII 573
            +  NY YG     +G +LLNNPDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VII
Sbjct:  192 ISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVII 246

[Close]

BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.448e-34
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = -2

Query:  180 RKRRRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 386
            R   RLPG+G+ TNIINGG+ECG   +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  261 RAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329

HSP 2 Score: 81.6481 bits (200), Expect = 2.448e-34
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = -1

Query:  412 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVII 573
            +  NY YG     +G +LLNNPDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VII
Sbjct:  197 ISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVII 251

[Close]

BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.411e-34
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = -2

Query:  180 RLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 374
            R+PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PG+NLDC NQR +G  L+   M
Sbjct:  258 RVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322

HSP 2 Score: 80.8777 bits (198), Expect = 5.411e-34
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = -1

Query:  415 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 573
            +  NY YG     +G +LLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VI
Sbjct:  190 ISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVI 243

[Close]

BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.048e-34
Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = -2

Query:  180 RLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 374
            R+PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  +M
Sbjct:  254 RVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318

HSP 2 Score: 77.7962 bits (190), Expect = 7.048e-34
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = -1

Query:  415 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 573
            +  NY YG     +G +LLNNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI
Sbjct:  186 ISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVI 239

[Close]

BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.195e-33
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = -2

Query:  180 RKRRRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 386
            R   RLPGYG+ TNIINGG+ECG+  +  V++RIGF+  +C   G+ PGDN+DC NQ+ +   L+ ++M
Sbjct:  266 RAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334

HSP 2 Score: 79.7221 bits (195), Expect = 1.195e-33
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = -1

Query:  415 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 573
            + +NY YG     +G+ LLNNPDL+AT+ V+SFKSAIWFWMTAQ PKPSCH+VI
Sbjct:  202 ISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVI 255

[Close]

BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.028e-33
Identity = 34/65 (52.31%), Postives = 49/65 (75.38%), Query Frame = -2

Query:  180 RLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 374
            R+PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  254 RVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318

HSP 2 Score: 77.7962 bits (190), Expect = 2.028e-33
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = -1

Query:  415 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 573
            +  NY YG     +G +LLNNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI
Sbjct:  186 ISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVI 239

[Close]

BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.640e-33
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = -2

Query:  180 LSRMETISK*RKRRRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 416
            + R    S  R   RLPG+G+ TNIINGG+ECG   ++ V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  ++
Sbjct:  250 IGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328

HSP 2 Score: 81.2629 bits (199), Expect = 2.640e-33
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = -1

Query:  400 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIENGN 573
            +  NY YG     +G +LLNNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VII   N
Sbjct:  196 ISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWN 254

[Close]

BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.642e-33
Identity = 34/65 (52.31%), Postives = 49/65 (75.38%), Query Frame = -2

Query:  180 RLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 374
            R+PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  252 RVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316

HSP 2 Score: 77.411 bits (189), Expect = 2.642e-33
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = -1

Query:  415 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 573
            +  NY YG     +G +LLNNPDL+ATD ++SFKSAIWFWMT Q PKPSCH+VI
Sbjct:  184 ISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVI 237

[Close]

BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.276e-33
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = -1

Query:  415 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 573
            L +NY YG     +GE+LLNNP+L+A+DPV+SFK+A+WFWMT Q PKPSCH+VI
Sbjct:  203 LSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVI 256

HSP 2 Score: 79.7221 bits (195), Expect = 4.276e-33
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = -2

Query:  189 RLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMA 374
            R+PGYG+ TNIINGG+ECG+  +D V NRIGF+  +C   GI  G NLDC +QRP+   L A
Sbjct:  271 RVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332

HSP 3 Score: 21.1718 bits (43), Expect = 4.276e-33
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = -2

Query:  567 RGPIQLSWN 593
            RGPIQLS+N
Sbjct:  198 RGPIQLSYN 206

[Close]

BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 7.598e-33
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = -2

Query:  180 RKRRRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 386
            R   RLPGYG  TNIINGG+ECG   +  V++RIGF+  +C  FGI  GDNLDC +QRP+G +L   S+
Sbjct:  248 RAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316

HSP 2 Score: 79.7221 bits (195), Expect = 7.598e-33
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = -1

Query:  415 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 573
            + +NY YG     +G +LLNNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VI
Sbjct:  184 ISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVI 237

The following BLAST results are available for this feature:

BLAST of CX296642 vs. ExPASy Swiss-Prot

BLAST of CX296642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52


Match Name	E-value	Identity	Description
CHI2_TOBAC	8.507e-35	48.10	Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1...	[more]
CHI1_TOBAC	2.448e-34	52.17	Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1...	[more]
CHIC_SOLLC	5.411e-34	52.31	Basic 30 kDa endochitinase OS=Solanum lycopersicum...	[more]
CHI1_SOLTU	7.048e-34	53.85	Endochitinase 1 (Fragment) OS=Solanum tuberosum GN...	[more]
CHI3_TOBAC	1.195e-33	49.28	Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3...	[more]
CHI3_SOLTU	2.028e-33	52.31	Endochitinase 3 (Fragment) OS=Solanum tuberosum GN...	[more]
CHIT_SOLTU	2.640e-33	46.84	Endochitinase OS=Solanum tuberosum PE=2 SV=1	[more]
CHI2_SOLTU	2.642e-33	52.31	Endochitinase 2 (Fragment) OS=Solanum tuberosum GN...	[more]
CHI9_ORYSJ	4.276e-33	64.81	Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht...	[more]
CHI2_PEA	7.598e-33	55.07	Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=...	[more]

Pages

Properties


Property Name	Value
Genbank description	C05801B09SK FerrChloL1 Citrus clementina cDNA clone C05801B09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX296642 ID=CX296642; Name=CX296642; organism=Citrus clementina; type=EST; length=609bp
GAGGCCTCGCTGCCGAATTCGGCACGAGGCTCATTGATCCATGTTGGATC
AGTCTTATTTAATTTACTTACAATAAGAGCGTAACAGTTTAGTTGTCCAC
CTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGCTTA
TTTTACTAAAACGTTGATCATGATGATCACATAGATTGTGCCATCAGATT
AAGGCCATAAGGCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCTGAA
TCCCAAACTTGCCACAGAAAGTGGTAAAGAACCCAATACGGTTACGTACA
GCGTCATTCCCAACGTAGCCACATTCAATTCCACCGTTGATTATATTTGT
GGTTAGACCGTATCCCGGAAGCCGGCGGCGTTTACGTCATTTGCTGATGG
TTTCCATTCTCGATAATGACTTCGTGGCACGATGGCTTTGGTGGCTGTGC
AGTCATCCAGAACCAGATTGCTGACTTGAATGATAGTACTGGATCAGTAG
CAAGAAGGTCTGGATTGTTCAACAACTCCTCTCCTACCCTAGGCTTCTCC
GCACCGTAGTAATTGAATTCCAAGAGAGTTGAATTGGACCTCGGCATAGT
ACTTCCCTC