CX296647

Overview
NameCX296647
Unique NameCX296647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1039 contig Ccv1_Contig1039:155..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296647 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.308e-15
Identity = 43/89 (48.31%), Postives = 52/89 (58.43%), Query Frame = 3
Query:   33 SNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFL 299
            +N K+ SALVADG SN   + G++AA+                M+ K  EE     EKVSWVPDPVTG YRPEN  NE+D AD+RA  L
Sbjct:    6 TNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93          
BLAST of CX296647 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.699e-11
Identity = 41/92 (44.57%), Postives = 52/92 (56.52%), Query Frame = 3
Query:   30 LSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 305
            L  AKL  A VADGIS +I +RGY+AA+                 L+    E +G+S   +W PDP+TG YRPEN A E+D A+LR M L H
Sbjct:    5 LFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKND--LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLLNH 92          
The following BLAST results are available for this feature:
BLAST of CX296647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ARG2_PHAAU3.308e-1548.31Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
LEA5_CITSI1.699e-1144.57Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
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Properties
Property NameValue
Genbank descriptionC05801C02SK FerrChloL1 Citrus clementina cDNA clone C05801C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296647 ID=CX296647; Name=CX296647; organism=Citrus clementina; type=EST; length=440bp
CACATAACTAAGAAAAATGGCTCGCTCTTCTCTCAAACGCTAAGCTTTTC
TCTGCTCTCGTCGCTGACGGAATCTCTAACGCCATCTACAAAAGAGGATA
CTCGGCGGCATCACAAGGCGCTGTGTCGCGGGCAACAGGGGGAGCTAGGA
GTGCTGCTGCGATGTTGAAGAAACCAGCAGAAGAGATGACAGGATCCAGT
GAGAAGGTCTCGTGGGTCCCAGACCCAGTCACTGGTGTCTACAGGCCGGA
GAATCTCGCCAACGAGCTCGATGGGGCCGACCTCAGAGCCATGTTCTTGA
AGCACAACAACTGATCATCAAAATTAATAAGTATTATTATTAATATATAT
TAATTCGGACATGGAAACTGAGGAAGGACGAAAGAAAAATTAAAAAAAGG
TTAAAAAGGGATTTGTTCTGATGTGGTCAGCCGCATGAGC
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