CX296652

Overview
NameCX296652
Unique NameCX296652
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14478 contig Ccv1_Contig14478:369..1088. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296652 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSJ (Protein IN2-1 homolog B OS=Oryza sativa subsp. japonica GN=GSTZ5 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.185e-31
Identity = 72/135 (53.33%), Postives = 90/135 (66.67%), Query Frame = -1
Query:  316 GPPRVPNSARGDDPEKRKFADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRSR 714
            GP  +P     DD EK++FA+EL ++ D F    Y+S   KGD   +A  A D +E AL KF+DGPFFLGQFS VDIAY+PF+ERFQIF S    YDIT GRP L  +IEE+NK+ AY  TK DP+ L+E  + R
Sbjct:  111 GPALLP-----DDSEKQQFAEELLAYTDAFNKASYSSIVAKGDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETKQDPQFLLEHTKKR 240          
BLAST of CX296652 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSI (Protein IN2-1 homolog B OS=Oryza sativa subsp. indica GN=GSTZ5 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.185e-31
Identity = 72/135 (53.33%), Postives = 90/135 (66.67%), Query Frame = -1
Query:  316 GPPRVPNSARGDDPEKRKFADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRSR 714
            GP  +P     DD EK++FA+EL ++ D F    Y+S   KGD   +A  A D +E AL KF+DGPFFLGQFS VDIAY+PF+ERFQIF S    YDIT GRP L  +IEE+NK+ AY  TK DP+ L+E  + R
Sbjct:  111 GPALLP-----DDSEKQQFAEELLAYTDAFNKASYSSIVAKGDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETKQDPQFLLEHTKKR 240          
BLAST of CX296652 vs. ExPASy Swiss-Prot
Match: IN21A_ORYSJ (Protein IN2-1 homolog A OS=Oryza sativa subsp. japonica GN=Os03g0283200 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.088e-28
Identity = 64/134 (47.76%), Postives = 88/134 (65.67%), Query Frame = -1
Query:  319 GPPRVPNSARGDDPEKRKFADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRS 714
            GP  +P     +DPEKR+FADEL ++ + FT  +Y+    K D + +   A D +E AL KF DGPFFLGQFS VDIAY+  +ER QI+ S   KY+IT GRP L  +IEE+N+++AY  TK DP  L++  ++
Sbjct:  110 GPALLP-----EDPEKRQFADELIAYANAFTKALYSPLISKADLSAETVAALDKIEAALSKFGDGPFFLGQFSLVDIAYVTIIERIQIYYSHIRKYEITNGRPNLEKFIEEINRIEAYTQTKNDPLYLLDLAKT 238          
BLAST of CX296652 vs. ExPASy Swiss-Prot
Match: IN21_MAIZE (Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.075e-24
Identity = 61/134 (45.52%), Postives = 81/134 (60.45%), Query Frame = -1
Query:  319 GPPRVPNSARGDDPEKRKFADELFSHIDTFTNDVYTSFKGDPA--KQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRS 714
            GP  +P     +D  KR+FADELF+  + FT  +Y+      A   +   A D LE  L KFDDGPFFLGQFS  D+AY+  +ER QI+ S    YDI  GRP L  +I+E+NK++AY  TK DP  L++  +S
Sbjct:  110 GPALLP-----EDAAKRQFADELFASANAFTKALYSPLLSHAAVSDEVVAALDKLEADLSKFDDGPFFLGQFSLADVAYVTILERVQIYYSHLRNYDIAQGRPNLQEFIDEMNKIEAYAQTKNDPLFLLDLAKS 238          
The following BLAST results are available for this feature:
BLAST of CX296652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IN21B_ORYSJ1.185e-3153.33Protein IN2-1 homolog B OS=Oryza sativa subsp. jap... [more]
IN21B_ORYSI1.185e-3153.33Protein IN2-1 homolog B OS=Oryza sativa subsp. ind... [more]
IN21A_ORYSJ6.088e-2847.76Protein IN2-1 homolog A OS=Oryza sativa subsp. jap... [more]
IN21_MAIZE1.075e-2445.52Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC05801C07SK FerrChloL1 Citrus clementina cDNA clone C05801C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296652 ID=CX296652; Name=CX296652; organism=Citrus clementina; type=EST; length=720bp
CCGAATTCGGCACGAGGAATTTTTATTATCGATAGCACAACATACAACGC
TAAACAAACACTAATACTTTAAGATATAAACAAGACGACAGTCAACAAAC
ATATAGGTACATATGAGATAGCATTCTGTCATACGAGATATCAACAAGTC
ATCAACTCATTCAATATCCAGCAACGTACACAAGCTCACATCGGCAAACA
ATATGTAATGCGTATAACGCGCAGCTTTATTATACGAGATTTTACAAACC
ACGCCACCAACTGATTCAGTGCGCTTCTAAGACGACTGATTGCAGGTTCA
CTGCTTGGCCACGAAGCGGCTCCTGTAAAATTCAACGAGTTCTTTTGGAT
CTGCTTTTGTTGACTTGTAAGCATCGAGCTTGTTCAACTCCTCAATCCAT
GCTGCCAGTTTAGGCCTGCCTGCAGTGATGTCATACTTAAATTCTTCTGA
TAAGAAGATCTGGAATCTCTCAACAAATGGAATATAGGCTATGTCCACCT
GACTGAACTGTCCAAGGAAGAACGGGCCATCATCAAATTTATCAAGGGCC
TTCTCTAAGTAATCAAAAGCAGGACCAGCTTGTTTTGCTGGGTCTCCTTT
GAATGAAGTATACACATCGTTGGTGAAGGTATCGATGTGGGAAAACAGTT
CATCAGCAAACTTTCGTTTCTCAGGATCATCACCTCTTGCCGAATTCGGC
ACGCGGGGGGGCCCGGTACC
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