CX296658

Overview
NameCX296658
Unique NameCX296658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296658 vs. ExPASy Swiss-Prot
Match: KIN10_ARATH (SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana GN=KIN10 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 8.876e-40
Identity = 76/97 (78.35%), Postives = 87/97 (89.69%), Query Frame = -3
Query:  419 PREIMTEVLKALQELNVGWKKIGHYNMKCRWIPGISGHHEGMVNNPLHSNHYFGDESAIIENDGVVKSPNVVKFEVQLYKTRDEKYLLDLQRVQGPQ 709
            PREIMTEVLKALQ+LNV WKKIGHYNMKCRW+P  S   +GM++N +H N+YFGDES+IIEN+  VKSPNVVKFE+QLYKTRD+KYLLDLQRVQGPQ
Sbjct:  424 PREIMTEVLKALQDLNVCWKKIGHYNMKCRWVPNSSA--DGMLSNSMHDNNYFGDESSIIENEAAVKSPNVVKFEIQLYKTRDDKYLLDLQRVQGPQ 518          
BLAST of CX296658 vs. ExPASy Swiss-Prot
Match: KIN11_ARATH (SNF1-related protein kinase catalytic subunit alpha KIN11 OS=Arabidopsis thaliana GN=KIN11 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.612e-33
Identity = 68/97 (70.10%), Postives = 78/97 (80.41%), Query Frame = -3
Query:  419 PREIMTEVLKALQELNVGWKKIGHYNMKCRWIPGISGHHEGMVNNPLHSNHYFGDESAIIENDGVVKSPNVVKFEVQLYKTRDEKYLLDLQRVQGPQ 709
            PREIM EVLKALQELNV WKKIGHYNMKCRW+PG++     MVNN LH    F DES+IIE+D  + SP V+KFE+QLYK R+EKYLLD+QRV GPQ
Sbjct:  403 PREIMNEVLKALQELNVCWKKIGHYNMKCRWVPGLADGQNTMVNNQLH----FRDESSIIEDDCAMTSPTVIKFELQLYKAREEKYLLDIQRVNGPQ 495          
BLAST of CX296658 vs. ExPASy Swiss-Prot
Match: RKIN1_SECCE (Carbon catabolite-derepressing protein kinase OS=Secale cereale GN=RKIN1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 58/99 (58.59%), Postives = 70/99 (70.71%), Query Frame = -3
Query:  419 PREIMTEVLKALQELNVGWKKIGH-YNMKCRWIPGISGHHEGMVNNPLHSNHYFGDESAIIEN-DGVVKSPNVVKFEVQLYKTRDEKYLLDLQRVQGPQ 709
            PR IM EVLKAL+ELNV WKK G  YNMKCRW PG     + +    L +NH F D+ AI +N D   + P V+KFE+QLYKT+D+KYLLD+QRV GPQ
Sbjct:  391 PRAIMIEVLKALKELNVCWKKNGDCYNMKCRWCPGFPRVSDML----LDANHSFVDDCAIKDNGDANSRLPAVIKFEIQLYKTKDDKYLLDMQRVTGPQ 485          
The following BLAST results are available for this feature:
BLAST of CX296658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
KIN10_ARATH8.876e-4078.35SNF1-related protein kinase catalytic subunit alph... [more]
KIN11_ARATH3.612e-3370.10SNF1-related protein kinase catalytic subunit alph... [more]
RKIN1_SECCE9.860e-2358.59Carbon catabolite-derepressing protein kinase OS=S... [more]
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Properties
Property NameValue
Genbank descriptionC05801D02SK FerrChloL1 Citrus clementina cDNA clone C05801D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296658 ID=CX296658; Name=CX296658; organism=Citrus clementina; type=EST; length=711bp
CGAGGCCTCGCGCCGAATTCGGCACGAGGTTTTTTTTTTTTTTTTTTTTA
ATGAAAGAACTTAATTCTTTCATTTAATTCATAAAATTACGGTTCGACAT
TGAGTAGGATCCTACAAAAGAGTTTCTGCAGTCGGAATCATAACCTGGAG
TCCTGGACTACCCAGTGACTTAGCCAGACCCAGCTTCACTGCTAATGACT
GGATTGAAACAACAACTACCCATATAAAACCTAGGGAAAATTTGAAAAAG
AAAAAGTTAACACGCAGATCCCAACTGAGGGACGAGTTTTATGTACATCG
TACGATGTTATTCACATGCATCGCAAAAGGCTCATGGACTAAGATCTTGT
TCAAGATCCTAGCATTAAAGAACCCGAAGCTGTGCAAGAAATGCTGCACA
TAGATCCAGAAAGAGAAACTGTGGACCCTGAACCCTCTGAAGGTCGAGCA
AGTATTTTTCATCGCGAGTTTTGTAAAGCTGCACTTCGAACTTGACCACA
TTTGGTGACTTGACAACACCATCATTTTCAATTATGGCAGATTCGTCACC
AAAGTAGTGATTACTGTGCAGTGGATTGTTAACCATGCCTTCGTGATGAC
CAGAAATGCCCGGAATCCATCTGCACTTCATGTTATAGTGCCCAATCTTC
TTCCAACCCACATTCAGTTCTTGCAAAGCTTTGAGAACTTCTGTCATTAT
TTCACGTGGAT
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