CX296660

Overview
NameCX296660
Unique NameCX296660
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296660 vs. ExPASy Swiss-Prot
Match: YTHD1_MOUSE (YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 53/92 (57.61%), Postives = 66/92 (71.74%), Query Frame = -2
Query:  452 QDKWSGQFPVKWHIIKDVPNSQFRHIILEKNDNKPVTNSRDTQEVELEQGIEMLNIFKNYESYSSILDDFHFYEQRQKAMQ-ERKAGQQANR 724
            QDKW G+F VKW  +KDVPN+Q RHI LE NDNKPVTNSRDTQEV LE+  ++L I  +Y+  +SI DDF  YE+RQ+  +  RK  Q  N+
Sbjct:  467 QDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEEVVRKERQNRNK 558          
BLAST of CX296660 vs. ExPASy Swiss-Prot
Match: YTHD2_MACFA (YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 50/88 (56.82%), Postives = 64/88 (72.73%), Query Frame = -2
Query:  461 QDKWSGQFPVKWHIIKDVPNSQFRHIILEKNDNKPVTNSRDTQEVELEQGIEMLNIFKNYESYSSILDDFHFYEQRQKAMQERKAGQQ 724
            QDKW G+F V+W  +KDVPNSQ RHI LE N+NKPVTNSRDTQEV LE+  ++L I  +Y+  +SI DDF  YE+RQ+  +  K  +Q
Sbjct:  488 QDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQ 575          
BLAST of CX296660 vs. ExPASy Swiss-Prot
Match: YTHD2_HUMAN (YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 50/88 (56.82%), Postives = 64/88 (72.73%), Query Frame = -2
Query:  461 QDKWSGQFPVKWHIIKDVPNSQFRHIILEKNDNKPVTNSRDTQEVELEQGIEMLNIFKNYESYSSILDDFHFYEQRQKAMQERKAGQQ 724
            QDKW G+F V+W  +KDVPNSQ RHI LE N+NKPVTNSRDTQEV LE+  ++L I  +Y+  +SI DDF  YE+RQ+  +  K  +Q
Sbjct:  488 QDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQ 575          
BLAST of CX296660 vs. ExPASy Swiss-Prot
Match: YTHD2_BOVIN (YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 50/88 (56.82%), Postives = 64/88 (72.73%), Query Frame = -2
Query:  461 QDKWSGQFPVKWHIIKDVPNSQFRHIILEKNDNKPVTNSRDTQEVELEQGIEMLNIFKNYESYSSILDDFHFYEQRQKAMQERKAGQQ 724
            QDKW G+F V+W  +KDVPNSQ RHI LE N+NKPVTNSRDTQEV LE+  ++L I  +Y+  +SI DDF  YE+RQ+  +  K  +Q
Sbjct:  489 QDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQ 576          
BLAST of CX296660 vs. ExPASy Swiss-Prot
Match: YTHD1_HUMAN (YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = -2
Query:  452 QDKWSGQFPVKWHIIKDVPNSQFRHIILEKNDNKPVTNSRDTQEVELEQGIEMLNIFKNYESYSSILDDFHFYEQRQKAMQ-ERKAGQQANR 724
            QDKW G+F V+W  +KDVPN+Q RHI LE NDNKPVTNSRDTQEV LE+  ++L I  +Y+  +SI DDF  YE+RQ+  +  RK  Q  N+
Sbjct:  467 QDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQEEEEVVRKERQSRNK 558          
BLAST of CX296660 vs. ExPASy Swiss-Prot
Match: YTHD3_PONAB (YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  452 QDKWSGQFPVKWHIIKDVPNSQFRHIILEKNDNKPVTNSRDTQEVELEQGIEMLNIFKNYESYSSILDDFHFYEQRQKAMQERKAGQQANR 724
            QDKW G+F VKW  +KDVPN+Q RHI LE NDNKPVTNSRDTQEV LE+  ++L I   ++  +SI DDF  YE+RQ+  +  +  +  N+
Sbjct:  494 QDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNRNK 584          
BLAST of CX296660 vs. ExPASy Swiss-Prot
Match: YTHD3_MOUSE (YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  452 QDKWSGQFPVKWHIIKDVPNSQFRHIILEKNDNKPVTNSRDTQEVELEQGIEMLNIFKNYESYSSILDDFHFYEQRQKAMQERKAGQQANR 724
            QDKW G+F VKW  +KDVPN+Q RHI LE NDNKPVTNSRDTQEV LE+  ++L I   ++  +SI DDF  YE+RQ+  +  +  +  N+
Sbjct:  494 QDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNRNK 584          
BLAST of CX296660 vs. ExPASy Swiss-Prot
Match: YTHD3_HUMAN (YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  452 QDKWSGQFPVKWHIIKDVPNSQFRHIILEKNDNKPVTNSRDTQEVELEQGIEMLNIFKNYESYSSILDDFHFYEQRQKAMQERKAGQQANR 724
            QDKW G+F VKW  +KDVPN+Q RHI LE NDNKPVTNSRDTQEV LE+  ++L I   ++  +SI DDF  YE+RQ+  +  +  +  N+
Sbjct:  494 QDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNRNK 584          
The following BLAST results are available for this feature:
BLAST of CX296660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
YTHD1_MOUSE3.512e-2357.61YTH domain family protein 1 OS=Mus musculus GN=Yth... [more]
YTHD2_MACFA1.022e-2256.82YTH domain family protein 2 OS=Macaca fascicularis... [more]
YTHD2_HUMAN1.022e-2256.82YTH domain family protein 2 OS=Homo sapiens GN=YTH... [more]
YTHD2_BOVIN1.022e-2256.82YTH domain family protein 2 OS=Bos taurus GN=YTHDF... [more]
YTHD1_HUMAN1.022e-2256.52YTH domain family protein 1 OS=Homo sapiens GN=YTH... [more]
YTHD3_PONAB1.743e-2253.85YTH domain family protein 3 OS=Pongo abelii GN=YTH... [more]
YTHD3_MOUSE1.743e-2253.85YTH domain family protein 3 OS=Mus musculus GN=Yth... [more]
YTHD3_HUMAN1.743e-2253.85YTH domain family protein 3 OS=Homo sapiens GN=YTH... [more]
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Properties
Property NameValue
Genbank descriptionC05801D05SK FerrChloL1 Citrus clementina cDNA clone C05801D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296660 ID=CX296660; Name=CX296660; organism=Citrus clementina; type=EST; length=728bp
GCCGAATTCGGCACGAGGAAACACCTATGACTATGATATATAAACCTATG
ATTTTAATCTGAACAAGTTCTTATCAATATTAAGAAACATCGAAATGGAT
ATCTGTGTAAACACCATTCAAACCTATGTATTAAGGCTATCATCTTAAGC
AGAATCTTCCATAGAATTGGTGATAGATAAACCAGCAAAGAAAAATAGGA
ATATACGGATCATGGCAGCTAGATTCAGGTTCACTTCCTACCTATCTGCT
TAGTTTGATTTAAAATTTTCCAGCTTAATCGCCGTGAGCCACAGCTGCGG
TGGAGACAACATTCCTCACTGATGAATGTTCTTTCTGATGCTCAGTCAAC
AACACAGCTTCAGCGAAGCTCTTGGACATTGTCTTTATGAAATCGTTTGA
TAGTGAAACTTGATTCTGTTTTTCCCCGCCTACTGCTAACGGGGGAGCCA
CTCGGTTTGCTTGCTGTCCAGCCTTCCTTTCCTGCATTGCTTTCTGTCGC
TGCTCGTAGAAGTGAAAGTCATCAAGAATGGATGAATAACTTTCATAGTT
CTTAAATATGTTCAACATCTCAATACCCTGTTCCAATTCCACCTCTTGAG
TATCTCTACTATTTGTAACTGGCTTGTTGTCGTTTTTTTCAAGTATAATG
TGTCGAAATTGACTGTTGGGGACATCCTTAATTATGTGCCACTTGACTGG
GAATTGTCCAGACCACTTATCCTGCAAC
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