CX296661

Overview
NameCX296661
Unique NameCX296661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296661_ssr24 microsatellite CX296661_ssr24:24..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10246 contig Ccv1_Contig10246:295..988. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296661 vs. ExPASy Swiss-Prot
Match: PHR2_ARATH (Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2 SV=2)

HSP 1 Score: 354.755 bits (909), Expect = 2.605e-97
Identity = 169/209 (80.86%), Postives = 194/209 (92.82%), Query Frame = 2
Query:   68 FKSTLSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 694
            FKST++ANPLQSPLS+ P RP+DP++ AA+RRA++VWFRNDLRVHDNE LN+AN+E VSVLPVYCFDPRDYGKSSSGFDKTGP+RA FLIESVS+LRKNLQARGS+LVVRVGKPE VLVELAK IGADAVYAHREVSHDEVK+E KIE AMK+EG+EVKYFWGSTLYHLDDLPFK+ ++P+NYG F++KV+ +EIRKTI ALDQLK LP
Sbjct:   84 FKSTIAANPLQSPLSIVPRRPVDPSSAAALRRAAVVWFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMKEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLKSLP 292          
BLAST of CX296661 vs. ExPASy Swiss-Prot
Match: CRYD_GLOVI (Cryptochrome DASH OS=Gloeobacter violaceus GN=cry PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.478e-39
Identity = 80/176 (45.45%), Postives = 119/176 (67.61%), Query Frame = 2
Query:  170 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLP 694
            +VW+RNDLRVHD+E L +A +++  V+ +YCFDPR +GK+  GF+KTGP+RA FL+ESV+DLR++L+  GSDL+VR G PE V+  L   +   AV+ H EV+ +E+  E  ++AA+    + V+ FWG+TL H DDLPF +  +P  +  FR++V +   I   + A  +L  LP
Sbjct:    7 LVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKAPFGFEKTGPFRARFLLESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEVTSEELVVERDLQAALAPLNVPVRSFWGTTLVHPDDLPFAIEAIPELFTDFRKQVERSAAINPPLPAPAKLPPLP 182          
BLAST of CX296661 vs. ExPASy Swiss-Prot
Match: CRYD_SYNY3 (Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803) GN=cry PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.963e-36
Identity = 75/177 (42.37%), Postives = 113/177 (63.84%), Query Frame = 2
Query:  170 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV--KGVEIRKTIEALDQLKGLP 694
            +VWFRNDLR+HD+E L+ A    +++  VYC+DPR + ++  GF KTGP+R++FL +SV +L ++LQ  G+ L+V  G PE V+ ++AK I A  +Y HREV+ +E+  E  +   +   GIE K +WGSTL H +DLPF + ++P  +  FR+ +  K + IR    A  QL   P
Sbjct:    9 LVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQLLPSP 185          
BLAST of CX296661 vs. ExPASy Swiss-Prot
Match: CRYD_XENLA (Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.743e-36
Identity = 82/182 (45.05%), Postives = 115/182 (63.19%), Query Frame = 2
Query:  161 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-ADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGLP 694
            R  I   RNDLR+HDNE L+ A+  +  ++P+YCFDPR Y G     F KTGP+R  FL+ESV DLR  L+ +GS+L++R GKPE V+ +L K +G   AV  H E + +E   E  ++ A    GI+ + FWGSTLYH +DLPF+ +  +P  Y  FR+ V+   ++R T +  D+LK LP
Sbjct:    6 RVIICLLRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLLESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAVKQACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVETQGKVRPTFQMPDKLKPLP 187          
BLAST of CX296661 vs. ExPASy Swiss-Prot
Match: CRYD_DANRE (Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.315e-35
Identity = 81/182 (44.51%), Postives = 110/182 (60.44%), Query Frame = 2
Query:  161 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA-HREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGLP 694
            R  I   RNDLR+HDNE  + A   +  ++P+YCFDPR Y G     F KTGP+R  FL++SV DLR  L+  GS L+VR GKPE V+ EL K +G+ +  A H EV+ +E   EEK++       + V+ FWGSTLYH DDLPF  +G +P  Y  FR+ V+    +R  +   +Q+K  P
Sbjct:    5 RTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLSTPEQVKSPP 186          
BLAST of CX296661 vs. ExPASy Swiss-Prot
Match: CRYD_ARATH (Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CRYD PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.134e-34
Identity = 75/161 (46.58%), Postives = 104/161 (64.60%), Query Frame = 2
Query:  167 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 640
            +I+WFRNDLRV DN++L  A + S ++LPVYC DPR +  +    F KTG  R  FL+E + DLRKNL  RG +L++R GKPE +L  LAK  GA  V+AH+E   +EV  E  +   +K  G   +++  WGST+YH DDLPF + ++P  Y  FR+ V+
Sbjct:   86 TILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVE 246          
BLAST of CX296661 vs. ExPASy Swiss-Prot
Match: CRYD_ORYSJ (Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CRYD PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.191e-33
Identity = 80/188 (42.55%), Postives = 110/188 (58.51%), Query Frame = 2
Query:  167 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM--------------KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 682
            +IVWFRNDLRV DNE++  A   S +VLPVYC DPR    S+   GF KTG  RA FLIE + DL++NL  +G DL++R GKPE +L  +AKA+ A  VYAH+E   +E+  E  +   +              K    +++  WG+TLYH+DDLPF +  +P  Y  FR   K VE + ++    +L
Sbjct:   86 AIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFR---KAVESKSSVRNCSKL 270          
BLAST of CX296661 vs. ExPASy Swiss-Prot
Match: CRYD_SOLLC (Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum GN=CRYD PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.032e-33
Identity = 78/175 (44.57%), Postives = 108/175 (61.71%), Query Frame = 2
Query:  167 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK------------DEG----IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 640
            +IVWFRNDLRV DNE+L  A   S ++LPVYC DPR +G +   G  KTG  RA F+IE ++DL++NL  RG DL+++ GKPE ++  LAKA  A  VYAH+E   +EVK E+ +   ++            D G     +++  WGST+YH+DDLPF    +P  Y  FR+ V+
Sbjct:   80 AIVWFRNDLRVLDNEALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIECLNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKMVTRNLQKLVSPSSGGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSVE 254          
BLAST of CX296661 vs. ExPASy Swiss-Prot
Match: CRYD_RHOBA (Cryptochrome DASH OS=Rhodopirellula baltica GN=cry PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 7.226e-31
Identity = 68/175 (38.86%), Postives = 104/175 (59.43%), Query Frame = 2
Query:  167 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG 688
            ++VWFRNDLR  D+E    A+        V+C DPR +  +  GF +TGP+RA FLIE+++DLR  L++ G +L+VRVG+PETVL  L  ++  DAV+ H E   +E  + E ++      GI     +G TL H D+LPF++ + P  +  FR+++ K  E R  +E   ++ G
Sbjct:    4 ALVWFRNDLRTIDHEPFLRASTAD-RCFAVHCIDPRQFETTELGFQRTGPFRARFLIENLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAESVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPLEEPIRIHG 177          
BLAST of CX296661 vs. ExPASy Swiss-Prot
Match: CRYD_NATPD (Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=cry PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 68/158 (43.04%), Postives = 102/158 (64.56%), Query Frame = 2
Query:  167 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 640
            ++VWFR+DLRV DN +L  A   + +V+PVY FDP  Y +S  G  KTG +RA F  ++V+DLR +L+ RG DL+VR G+P TV+ ELA+  GADAVYA  + + +E +    + +A+ D GI ++  W  TLYH DDLP    ++   +  +R++ +
Sbjct:    4 AVVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDPDRYTESEYGPPKTGGHRAVFRRQAVADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRAADVASALDDAGIALRQRWTHTLYHPDDLPTPPTDIDDTFTPWRKETE 161          
The following BLAST results are available for this feature:
BLAST of CX296661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PHR2_ARATH2.605e-9780.86Blue-light photoreceptor PHR2 OS=Arabidopsis thali... [more]
CRYD_GLOVI2.478e-3945.45Cryptochrome DASH OS=Gloeobacter violaceus GN=cry ... [more]
CRYD_SYNY31.963e-3642.37Cryptochrome DASH OS=Synechocystis sp. (strain PCC... [more]
CRYD_XENLA9.743e-3645.05Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE... [more]
CRYD_DANRE6.315e-3544.51Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 ... [more]
CRYD_ARATH3.134e-3446.58Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_ORYSJ1.191e-3342.55Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_SOLLC2.032e-3344.57Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_RHOBA7.226e-3138.86Cryptochrome DASH OS=Rhodopirellula baltica GN=cry... [more]
CRYD_NATPD7.989e-3043.04Cryptochrome DASH OS=Natronomonas pharaonis (strai... [more]

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Properties
Property NameValue
Genbank descriptionC05801D06SK FerrChloL1 Citrus clementina cDNA clone C05801D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296661 ID=CX296661; Name=CX296661; organism=Citrus clementina; type=EST; length=694bp
ACAAGCCTCTACGCTTACCCACATCTCTCTCTCCGCCTCCTCCACTCTCT
CTCCTTCCAAAATTTCATTCAAGTCCACACTCTCCGCAAACCCTCTTCAG
AGCCCTCTCTCTTTAGGGCCCCACCGCCCCTTGGACCCGAACAATGGGGC
CGCAATTCGTCGAGCTTCCATTGTTTGGTTCCGCAACGACTTGCGGGTCC
ATGATAACGAATCTCTCAACACCGCCAATAACGAGAGCGTCTCTGTTTTG
CCTGTTTATTGTTTCGACCCGAGGGATTACGGCAAATCCTCTTCTGGCTT
TGACAAAACGGGGCCGTATCGGGCATCGTTTTTGATTGAGTCAGTTTCTG
ACCTTCGCAAGAACTTGCAGGCACGTGGGTCTGATCTCGTGGTGAGAGTG
GGAAAGCCGGAGACTGTTCTGGTCGAGTTGGCTAAAGCCATTGGAGCTGA
TGCAGTGTACGCGCACAGAGAGGTGTCACATGATGAGGTTAAATCGGAGG
AGAAGATTGAGGCAGCGATGAAAGACGAGGGAATTGAAGTGAAGTACTTT
TGGGGAAGCACTTTGTACCATCTTGATGATTTGCCGTTTAAGTTGGGGGA
AATGCCGACTAATTATGGTGGGTTTAGAGAGAAGGTTAAGGGCGTGGAGA
TTCGGAAGACGATTGAGGCATTGGATCAGTTGAAGGGATTGCCG
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