CX296663

Overview
NameCX296663
Unique NameCX296663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296663_ssr408 microsatellite CX296663_ssr408:408..419. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5672 contig Ccv1_Contig5672:120..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL1M_ARATH (RING-H2 finger protein ATL1M OS=Arabidopsis thaliana GN=ATL1M PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.259e-29
Identity = 65/117 (55.56%), Postives = 75/117 (64.10%), Query Frame = 1
Query:  346 YAKWFWWRIEQ----------TXXXXXXXXXXXXXXFVFAPGQDPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            YA+ FWWR+EQ                         FVFA  Q+  +   AGLD  IL+ I VV F   DFKDGLECAVCLS+L DG+KAR+LP+CNHGFHV+CIDMWFQSHSTCPL
Sbjct:   45 YARLFWWRVEQHFNLNLIQSDDPGSTVIGRNPRRRRFVFAQSQEDPLH-NAGLDSKILQSIHVVVFKCTDFKDGLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPL 160          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL1P_ARATH (RING-H2 finger protein ATL1P OS=Arabidopsis thaliana GN=ATL1P PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.974e-27
Identity = 60/125 (48.00%), Postives = 70/125 (56.00%), Query Frame = 1
Query:  346 YAKWFWWRIEQ------------------TXXXXXXXXXXXXXXFVFAPGQDPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            YAK +WWRI+Q                  +              F+F PGQD       GL    L  +P+V F Q   KDGLEC++CLSEL  G+KARLLPKCNH FHVECIDMWFQSHSTCP+
Sbjct:   45 YAKLYWWRIDQLQQQQQQQQQEQEQEEDQSSIAPPVVTRRQRRRFIFVPGQD--ALSNTGLTSFELSSLPIVFFRQDSCKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPI 167          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL3E_ARATH (Putative RING-H2 finger protein ATL3E OS=Arabidopsis thaliana GN=ATL3E PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.336e-22
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 1
Query:  463 RAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            R G+ P +LR IP+V FN +DFK  LEC VCLSEL DG+KAR+LP C+H FHVECID W QS+STCP+
Sbjct:   61 RVGIKPYVLRSIPIVDFNTKDFKYVLECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPI 128          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL3F_ARATH (RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.663e-22
Identity = 51/146 (34.93%), Postives = 74/146 (50.68%), Query Frame = 1
Query:  235 DENGFNNTGSLEITGQXXXXXXXXXXXXXXXXXXXXXYAKWFWWRIEQTXXXXXXXXXXXXXXFVFAPGQDPAVTLRA--GLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            ++N F+ + +  ++G+                     YA+W+  R  +               F  A     A ++ A  GLDP +++ +PV  F+ +  KD +ECAVCLSE E+ E  R+LP C H FHV+CIDMWF SHSTCPL
Sbjct:   14 EDNNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPL 159          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1
Query:  469 GLDPAILRKIPVVAFN-----------QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            G+DP +LR +PV  ++           +++  DG+ECAVCL+ELEDGE+AR LP+C HGFH EC+DMW  SHSTCPL
Sbjct:   98 GVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPL 174          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL4G_ARATH (RING-H2 finger protein ATL4G OS=Arabidopsis thaliana GN=ATL4G PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.216e-17
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1
Query:  445 DPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            DP+ T   GL+P+I++ +P+  F+       +EC+VCLSE +D E  R++P C H FHV CIDMWF SHS+CPL
Sbjct:   44 DPSST-PGGLNPSIIKSLPIFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPL 116          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.222e-16
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1
Query:  466 AGLDPAILRKIPVVAFNQ-QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            +G+D +++  +PV  F      KDGLECAVCL+  E  E  RLLPKC H FHVEC+D W  +HSTCPL
Sbjct:  119 SGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPL 186          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL5G_ARATH (Probable RING-H2 finger protein ATL5G OS=Arabidopsis thaliana GN=ATL5G PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  469 GLDPAILRKIPVVAFNQQD-FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            GL+ ++++ I V  +   D F DG +C+VCLSE E+ E  RLLPKCNH FH+ CID W +SHS CPL
Sbjct:  116 GLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPL 182          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  463 RAGLDPAILRKIPVVAFNQ-QDFKDG---LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            R GLD A++   PV A++  ++ K G   LECA+CL+ELED E  RLLP CNH FH++CID W  SH+TCP+
Sbjct:   92 RGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPV 163          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL3H_ARATH (Putative RING-H2 finger protein ATL3H OS=Arabidopsis thaliana GN=ATL3H PE=5 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  436 PGQDPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCP 663
            P     V    G++P++L  IPVV+FN   FKD +EC VCLS+  D +KAR+LP CNH FH +  D W  S  TCP
Sbjct:   43 PSHSLHVIKATGINPSVLLSIPVVSFNANAFKDNIECVVCLSKFIDEDKARVLPSCNHCFHFDFTDTWLHSDYTCP 118          
The following BLAST results are available for this feature:
BLAST of CX296663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ATL1M_ARATH1.259e-2955.56RING-H2 finger protein ATL1M OS=Arabidopsis thalia... [more]
ATL1P_ARATH9.974e-2748.00RING-H2 finger protein ATL1P OS=Arabidopsis thalia... [more]
ATL3E_ARATH4.336e-2266.18Putative RING-H2 finger protein ATL3E OS=Arabidops... [more]
ATL3F_ARATH5.663e-2234.93RING-H2 finger protein ATL3F OS=Arabidopsis thalia... [more]
EL5_ORYSJ1.822e-2054.55E3 ubiquitin-protein ligase EL5 OS=Oryza sativa su... [more]
ATL4G_ARATH3.216e-1750.00RING-H2 finger protein ATL4G OS=Arabidopsis thalia... [more]
ATL5C_ARATH1.222e-1654.41RING-H2 finger protein ATL5C OS=Arabidopsis thalia... [more]
ATL5G_ARATH6.065e-1653.73Probable RING-H2 finger protein ATL5G OS=Arabidops... [more]
ATL4O_ARATH6.065e-1654.17RING-H2 finger protein ATL4O OS=Arabidopsis thalia... [more]
ATL3H_ARATH6.065e-1648.68Putative RING-H2 finger protein ATL3H OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05801D08SK FerrChloL1 Citrus clementina cDNA clone C05801D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296663 ID=CX296663; Name=CX296663; organism=Citrus clementina; type=EST; length=667bp
CCGAATTCGGAACGAGGGAATCTTTCTTCCTTTCTTGTGAAGTGATCAGC
GGATCACTTCCTCGTTATTAAAGCCACCATATTTAAGAAACACAAATCCA
ACTTTTGCACCCTTATCAAAACTAAAAACTTCTTTCGTTTCTTGTATAAA
GTTTCTCTCGTTCCGACACAAGCACACAAAAATCCTCATCTGGGTTTGTT
TTGCTTCTAACGAAAAATGAGTGCCTCTGACGGTGATGAAAATGGATTTA
ACAACACCGGTTCTCTTGAAATAACGGGACAAATCATGGTGATAGCAATA
ATTGTTCTCTTTTTCGTAGTGATCTTTATTCTGTTTCTTCACCTGTACGC
CAAGTGGTTCTGGTGGCGGATTGAGCAGACGCCGGAACCTTCTCCCAGTC
GTAGCCACCGCCGCCGCCGTCGTTTTGTCTTTGCTCCCGGGCAGGACCCT
GCTGTCACTCTCCGAGCTGGGCTTGATCCTGCAATCCTGAGGAAAATCCC
TGTGGTTGCATTCAACCAACAGGACTTTAAAGATGGACTTGAATGTGCAG
TGTGCTTAAGCGAGCTTGAAGATGGAGAGAAAGCTAGGCTGCTGCCGAAA
TGTAACCATGGGTTTCATGTTGAGTGCATTGACATGTGGTTTCAGTCTCA
CTCAACTTGCCCTCTCT
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