CX296663
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL1M_ARATH (RING-H2 finger protein ATL1M OS=Arabidopsis thaliana GN=ATL1M PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.259e-29 Identity = 65/117 (55.56%), Postives = 75/117 (64.10%), Query Frame = 1 Query: 346 YAKWFWWRIEQ----------TXXXXXXXXXXXXXXFVFAPGQDPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666 YA+ FWWR+EQ FVFA Q+ + AGLD IL+ I VV F DFKDGLECAVCLS+L DG+KAR+LP+CNHGFHV+CIDMWFQSHSTCPL Sbjct: 45 YARLFWWRVEQHFNLNLIQSDDPGSTVIGRNPRRRRFVFAQSQEDPLH-NAGLDSKILQSIHVVVFKCTDFKDGLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPL 160
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL1P_ARATH (RING-H2 finger protein ATL1P OS=Arabidopsis thaliana GN=ATL1P PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.974e-27 Identity = 60/125 (48.00%), Postives = 70/125 (56.00%), Query Frame = 1 Query: 346 YAKWFWWRIEQ------------------TXXXXXXXXXXXXXXFVFAPGQDPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666 YAK +WWRI+Q + F+F PGQD GL L +P+V F Q KDGLEC++CLSEL G+KARLLPKCNH FHVECIDMWFQSHSTCP+ Sbjct: 45 YAKLYWWRIDQLQQQQQQQQQEQEQEEDQSSIAPPVVTRRQRRRFIFVPGQD--ALSNTGLTSFELSSLPIVFFRQDSCKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPI 167
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL3E_ARATH (Putative RING-H2 finger protein ATL3E OS=Arabidopsis thaliana GN=ATL3E PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.336e-22 Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 1 Query: 463 RAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666 R G+ P +LR IP+V FN +DFK LEC VCLSEL DG+KAR+LP C+H FHVECID W QS+STCP+ Sbjct: 61 RVGIKPYVLRSIPIVDFNTKDFKYVLECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPI 128
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL3F_ARATH (RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 5.663e-22 Identity = 51/146 (34.93%), Postives = 74/146 (50.68%), Query Frame = 1 Query: 235 DENGFNNTGSLEITGQXXXXXXXXXXXXXXXXXXXXXYAKWFWWRIEQTXXXXXXXXXXXXXXFVFAPGQDPAVTLRA--GLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666 ++N F+ + + ++G+ YA+W+ R + F A A ++ A GLDP +++ +PV F+ + KD +ECAVCLSE E+ E R+LP C H FHV+CIDMWF SHSTCPL Sbjct: 14 EDNNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPL 159
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20 Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1 Query: 469 GLDPAILRKIPVVAFN-----------QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666 G+DP +LR +PV ++ +++ DG+ECAVCL+ELEDGE+AR LP+C HGFH EC+DMW SHSTCPL Sbjct: 98 GVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPL 174
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL4G_ARATH (RING-H2 finger protein ATL4G OS=Arabidopsis thaliana GN=ATL4G PE=2 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 3.216e-17 Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1 Query: 445 DPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666 DP+ T GL+P+I++ +P+ F+ +EC+VCLSE +D E R++P C H FHV CIDMWF SHS+CPL Sbjct: 44 DPSST-PGGLNPSIIKSLPIFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPL 116
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.222e-16 Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1 Query: 466 AGLDPAILRKIPVVAFNQ-QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666 +G+D +++ +PV F KDGLECAVCL+ E E RLLPKC H FHVEC+D W +HSTCPL Sbjct: 119 SGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPL 186
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL5G_ARATH (Probable RING-H2 finger protein ATL5G OS=Arabidopsis thaliana GN=ATL5G PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16 Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 1 Query: 469 GLDPAILRKIPVVAFNQQD-FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666 GL+ ++++ I V + D F DG +C+VCLSE E+ E RLLPKCNH FH+ CID W +SHS CPL Sbjct: 116 GLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPL 182
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16 Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 463 RAGLDPAILRKIPVVAFNQ-QDFKDG---LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666 R GLD A++ PV A++ ++ K G LECA+CL+ELED E RLLP CNH FH++CID W SH+TCP+ Sbjct: 92 RGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPV 163
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL3H_ARATH (Putative RING-H2 finger protein ATL3H OS=Arabidopsis thaliana GN=ATL3H PE=5 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16 Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 1 Query: 436 PGQDPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCP 663 P V G++P++L IPVV+FN FKD +EC VCLS+ D +KAR+LP CNH FH + D W S TCP Sbjct: 43 PSHSLHVIKATGINPSVLLSIPVVSFNANAFKDNIECVVCLSKFIDEDKARVLPSCNHCFHFDFTDTWLHSDYTCP 118 The following BLAST results are available for this feature:
BLAST of CX296663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296663 ID=CX296663; Name=CX296663; organism=Citrus clementina; type=EST; length=667bpback to top |