CX296679

Overview
NameCX296679
Unique NameCX296679
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length302
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig588 contig Ccv1_Contig588:999..1300. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296679 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.819e-36
Identity = 71/94 (75.53%), Postives = 76/94 (80.85%), Query Frame = 2 
Query:   20 RHEEFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEK 301
            R E+FYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVR W            LVNSKE  P+FEQP+MT++K
Sbjct:  299 RMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDK 392
[Close]
BLAST of CX296679 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.566e-35
Identity = 71/94 (75.53%), Postives = 76/94 (80.85%), Query Frame = 2 
Query:   20 RHEEFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEK 301
            R E+FYWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP+MT+EK
Sbjct:  299 RMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEK 392
[Close]
BLAST of CX296679 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.663e-34
Identity = 68/94 (72.34%), Postives = 75/94 (79.79%), Query Frame = 2 
Query:   20 RHEEFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEK 301
            R E+FYWAPTREDRIGVCKGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP+MT++K
Sbjct:  299 RMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDK 392
[Close]
BLAST of CX296679 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.837e-34
Identity = 67/94 (71.28%), Postives = 75/94 (79.79%), Query Frame = 2 
Query:   20 RHEEFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEK 301
            R E+FYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVR W            LVNS+E  PTF+QP+MT+EK
Sbjct:  286 RMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEK 379
[Close]
BLAST of CX296679 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 3.705e-34
Identity = 66/94 (70.21%), Postives = 75/94 (79.79%), Query Frame = 2 
Query:   20 RHEEFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEK 301
            R E+FYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVR W            LVNS+E  P FEQP+MT+EK
Sbjct:  290 RMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEK 383
[Close]
BLAST of CX296679 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.137e-33
Identity = 64/94 (68.09%), Postives = 75/94 (79.79%), Query Frame = 2 
Query:   20 RHEEFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEK 301
            R E+FYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVR W            L+NS++  PTFEQP+MT+EK
Sbjct:  298 RMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEK 391
[Close]
BLAST of CX296679 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 3.137e-33
Identity = 64/94 (68.09%), Postives = 74/94 (78.72%), Query Frame = 2 
Query:   20 RHEEFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEK 301
            R E+FYWAPTR+DR+GVCKGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTF+QP+M+++K
Sbjct:  301 RMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDK 394
[Close]
BLAST of CX296679 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 3.137e-33
Identity = 66/94 (70.21%), Postives = 74/94 (78.72%), Query Frame = 2 
Query:   20 RHEEFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEK 301
            R E+FYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP++T+EK
Sbjct:  295 RMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEK 388
[Close]
BLAST of CX296679 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.137e-33
Identity = 66/94 (70.21%), Postives = 74/94 (78.72%), Query Frame = 2 
Query:   20 RHEEFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEK 301
            R ++FYWAPTREDRIG+C GIFR D V  +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE+ PTF+QP+MT+EK
Sbjct:  296 RMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEK 389
[Close]
BLAST of CX296679 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.350e-33
Identity = 64/94 (68.09%), Postives = 75/94 (79.79%), Query Frame = 2 
Query:   20 RHEEFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEK 301
            R E+FYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVR W            LVNS++   TFEQP+MT+EK
Sbjct:  289 RMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 382
The following BLAST results are available for this feature:
BLAST of CX296679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA1_LARTR8.819e-3675.53Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO2.566e-3575.53Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR1.663e-3472.34Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU2.837e-3471.28Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ3.705e-3470.21Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN3.137e-3368.09Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU3.137e-3368.09Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE3.137e-3370.21Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA3.137e-3370.21Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU5.350e-3368.09Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC05801F03SK FerrChloL1 Citrus clementina cDNA clone C05801F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296679 ID=CX296679; Name=CX296679; organism=Citrus clementina; type=EST; length=302bp
GAGGCCTCGCTGCCGAATTCGGCACGAGGAATTCTACTGGGCACCTACAA
GGGAGGACCGTATTGGTGTGTGCAAGGGTATCTTCAGGAATGACAATGTG
GCTGATGACGACATTGTCAAGCTTGTTGACACCTTCCCCGGCCAATCCAT
TGATTTCTTTGGAGCCCTGAGGGCCAGAGTCTATGATGATGAGGTGAGGA
ATTGGATCTCTGGTATTGGTGTTGGAAGCATTGGCAAGAGCCTTGTGAAC
TCAAAGGAAGCAGCCCCAACATTCGAGCAACCAAGGATGACAATGGAGAA
GC
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