CX296683

Overview
NameCX296683
Unique NameCX296683
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length346
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig318 contig Ccv1_Contig318:321..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296683 vs. ExPASy Swiss-Prot
Match: FDH_SOLTU (Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 4.423e-48
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = -1
Query:   68 AIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 346
            AIMDTQAVVDAC+SGHIAGYSGDVW PQPAPKDHPWRYMPNQAMTPH+SGTTIDAQLRYAAG KDMLDRYFKGEDFP +NYIVK GELAPQYR
Sbjct:  289 AIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHPWRYMPNQAMTPHISGTTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAPQYR 381          
BLAST of CX296683 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.140e-46
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = -1
Query:   68 AIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 346
            AIMDTQAV DACSSGHIAGY GDVW PQPAPKDHPWRYMPN AMTPH+SGTTIDAQLRYAAGVKDMLDRYFKGE+FPV+NYIVK GELA QY+
Sbjct:  285 AIMDTQAVADACSSGHIAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEEFPVENYIVKEGELASQYK 377          
BLAST of CX296683 vs. ExPASy Swiss-Prot
Match: FDH1_ORYSJ (Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 2.055e-45
Identity = 82/93 (88.17%), Postives = 86/93 (92.47%), Query Frame = -1
Query:   68 AIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 346
            AIMDTQAV DACSSG +AGY GDVW PQPAPKDHPWRYMPN AMTPH+SGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVK G+LA QY+
Sbjct:  284 AIMDTQAVADACSSGQVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKEGQLASQYQ 376          
BLAST of CX296683 vs. ExPASy Swiss-Prot
Match: FDH2_ORYSJ (Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.505e-45
Identity = 81/93 (87.10%), Postives = 85/93 (91.40%), Query Frame = -1
Query:   68 AIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 346
            AIMDTQAV DAC+SGH+AGY GDVW PQPAPKDHPWRYMPN AMTPH SGTTID QLRYAAGVKDMLDRYFKGEDFP QNYIVKAG+LA QY+
Sbjct:  286 AIMDTQAVADACASGHVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHCSGTTIDGQLRYAAGVKDMLDRYFKGEDFPAQNYIVKAGQLASQYQ 378          
BLAST of CX296683 vs. ExPASy Swiss-Prot
Match: FDH_ARATH (Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.020e-44
Identity = 81/93 (87.10%), Postives = 85/93 (91.40%), Query Frame = -1
Query:   68 AIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 346
            AIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SGTTIDAQLRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct:  292 AIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 384          
BLAST of CX296683 vs. ExPASy Swiss-Prot
Match: FDH_PSESR (Formate dehydrogenase OS=Pseudomonas sp. (strain 101) PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 7.598e-24
Identity = 49/88 (55.68%), Postives = 62/88 (70.45%), Query Frame = -1
Query:   80 IMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 343
            + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SGTT+ AQ RYAAG +++L+ +F+G     +  IV+ G LA
Sbjct:  288 LCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 375          
BLAST of CX296683 vs. ExPASy Swiss-Prot
Match: FDH1_YEAST (Formate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=FDH1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.341e-20
Identity = 51/95 (53.68%), Postives = 65/95 (68.42%), Query Frame = -1
Query:   80 AIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AMTPHVSGTTIDAQLRYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELA 346
            AI   + V +A  SG +AGY GDVW+ QPAPKDHPWR M N+     AMT H+SGT++DAQ RYA GVK++L+ YF K  D+  Q+ IV+ G  A
Sbjct:  274 AICVAEDVAEAVKSGKLAGYGGDVWDKQPAPKDHPWRTMDNKDHVGNAMTVHISGTSLDAQKRYAQGVKNILNSYFSKKFDYRPQDIIVQNGSYA 368          
BLAST of CX296683 vs. ExPASy Swiss-Prot
Match: FDH_EMENI (Probable formate dehydrogenase OS=Emericella nidulans GN=aciA PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 2.988e-20
Identity = 49/95 (51.58%), Postives = 62/95 (65.26%), Query Frame = -1
Query:   80 AIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELA 346
            AI+  + V +A  SGH+ GY GDVW PQPAPK+HP RY  +      A  PH+SGT+IDAQ+RYA G K +LD YF G  D+  Q+ IV  G+ A
Sbjct:  273 AIVVKEDVAEALKSGHLRGYGGDVWFPQPAPKEHPLRYAEHPWGGGNATVPHMSGTSIDAQIRYANGTKAILDSYFSGRFDYQPQDLIVHGGDYA 367          
BLAST of CX296683 vs. ExPASy Swiss-Prot
Match: FDH2_YEAST (Formate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=FDH2 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.693e-20
Identity = 50/95 (52.63%), Postives = 64/95 (67.37%), Query Frame = -1
Query:   80 AIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AMTPHVSGTTIDAQLRYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELA 346
            AI   + V +A  SG +AGY GDVW+ QPAPKDHPWR M N+     AMT H+SGT++ AQ RYA GVK++L+ YF K  D+  Q+ IV+ G  A
Sbjct:  274 AICVAEDVAEAVKSGKLAGYGGDVWDKQPAPKDHPWRTMDNKDHVGNAMTVHISGTSLHAQKRYAQGVKNILNSYFSKKFDYRPQDIIVQNGSYA 368          
BLAST of CX296683 vs. ExPASy Swiss-Prot
Match: FDH_NEUCR (Formate dehydrogenase OS=Neurospora crassa GN=fdh PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.135e-19
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = -1
Query:   80 AIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELA 346
            AI+  + V +A  SGH+ GY GDVW PQPAP+DHP RY  N      AM PH+SGT++DAQ RYAAG K +++ Y  G+ D+  ++ IV  G+ A
Sbjct:  261 AIVVKEDVAEALKSGHLRGYGGDVWFPQPAPQDHPLRYAKNPFGGGNAMVPHMSGTSLDAQKRYAAGTKAIIESYLSGKHDYRPEDLIVYGGDYA 355          
The following BLAST results are available for this feature:
BLAST of CX296683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FDH_SOLTU4.423e-4892.47Formate dehydrogenase, mitochondrial OS=Solanum tu... [more]
FDH_HORVU4.140e-4689.25Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
FDH1_ORYSJ2.055e-4588.17Formate dehydrogenase 1, mitochondrial OS=Oryza sa... [more]
FDH2_ORYSJ3.505e-4587.10Formate dehydrogenase 2, mitochondrial OS=Oryza sa... [more]
FDH_ARATH1.020e-4487.10Formate dehydrogenase, mitochondrial OS=Arabidopsi... [more]
FDH_PSESR7.598e-2455.68Formate dehydrogenase OS=Pseudomonas sp. (strain 1... [more]
FDH1_YEAST1.341e-2053.68Formate dehydrogenase 1 OS=Saccharomyces cerevisia... [more]
FDH_EMENI2.988e-2051.58Probable formate dehydrogenase OS=Emericella nidul... [more]
FDH2_YEAST8.693e-2052.63Formate dehydrogenase 2 OS=Saccharomyces cerevisia... [more]
FDH_NEUCR1.135e-1949.47Formate dehydrogenase OS=Neurospora crassa GN=fdh ... [more]

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Properties
Property NameValue
Genbank descriptionC05801F07SK FerrChloL1 Citrus clementina cDNA clone C05801F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296683 ID=CX296683; Name=CX296683; organism=Citrus clementina; type=EST; length=346bp
CCGAATTCGGCACGAGGGATCGTTTGATCTTATTCTCTGTTGAACAGGAC
CTTCACACGTGAAATTATCGATATTGAGGTGCCAGCTCCCCCGCCTTCAC
TATGTAATTTTGAACAGGAAAATCTTCTCCCTTGAAGTATCTGTCAAGCA
TATCCTTGACTCCCGCAGCATAGCGTAGCTGTGCATCAATAGTGGTCCCA
GAAACATGAGGGGTCATTGCCTGATTTGGCATGTAACGCCAGGGATGGTC
CTTTGGAGCTGGTTGTGGATTCCAAACATCACCACTATAACCTGCAATGT
GTCCACTAGAGCAAGCGTCAACAACAGCTTGTGTGTCCATGATTGC
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