CX296693

Overview
NameCX296693
Unique NameCX296693
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig514 contig Ccv1_Contig514:256..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 4.903e-108
Identity = 197/213 (92.49%), Postives = 207/213 (97.18%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TIQILKGLRERYEIHHKLRYTDE LV+AAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEA+ELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQI+AL+DK KE+SKAE+EA D GP+VTE DIQHIVS+WTGIPVEKVSTDESDRLLKMEETLH R+IGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKS+
Sbjct:  439 TIQILKGLRERYEIHHKLRYTDEDLVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAKELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSE 651          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 2.691e-106
Identity = 197/214 (92.06%), Postives = 206/214 (96.26%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGD-VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TIQILKGLRERYEIHHKL YTDEA+ +AA+LS+QYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISAL+DK KE SKAE+EAGD  GP+VTE DIQHIVS+WTGIPVEKVSTDESDRLLKMEETLH RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKS+
Sbjct:  441 TIQILKGLRERYEIHHKLHYTDEAIEAAAKLSHQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALIDKNKEKSKAESEAGDAAGPIVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSE 654          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 377.867 bits (969), Expect = 2.518e-104
Identity = 187/213 (87.79%), Postives = 205/213 (96.24%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TIQILKGLRERYEIHHKLRYTDEAL++AAQLSYQYISDRFLPDKAIDL+DEAGSRVRL+HAQLPEEA+EL+KE+R+I KEK E VR QDFEKAGELRD+EMDLKAQISAL++KGKEMSKAETE  D GP+VTEVDIQHIVS+WTGIPV+KVS DESDRLLKME+TLHKR+IGQDEAV+AISRAIRRARVGLKNPNRPIASFIFSGPTGVGKS+
Sbjct:  439 TIQILKGLRERYEIHHKLRYTDEALIAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLQHAQLPEEAKELDKEVRKIVKEKEEYVRNQDFEKAGELRDKEMDLKAQISALIEKGKEMSKAETETADEGPIVTEVDIQHIVSSWTGIPVDKVSADESDRLLKMEDTLHKRIIGQDEAVQAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSE 651          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 5.806e-101
Identity = 188/213 (88.26%), Postives = 203/213 (95.31%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TIQILKGLRERYEIHHKLRYTDE+LV+AAQLSYQYISDRFLPD+AIDL+DEAGSRVRLRHAQ+PEEARELEKELRQITKE NEAVRGQDFEKAG LRDRE++L+A++SA+  KGKEMSKAE+E GD GP+VTE DIQHIVS+WTGI VEKVSTDESD LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIF GPTGVGKS+
Sbjct:  388 TIQILKGLRERYEIHHKLRYTDESLVAAAQLSYQYISDRFLPDRAIDLMDEAGSRVRLRHAQVPEEARELEKELRQITKE-NEAVRGQDFEKAGTLRDREIELRAEVSAIQAKGKEMSKAESETGDEGPMVTESDIQHIVSSWTGILVEKVSTDESDLLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFFGPTGVGKSE 599          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.440e-75
Identity = 148/215 (68.84%), Postives = 178/215 (82.79%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALV--DKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI+IL GLR+RYE HHKL  +DEAL +AA+ + QYI+DRFLPDKAIDLIDEAGSRVRL ++QLP  AREL+KELR+I K+K+EAVR QDFE AG+LRDREM++KAQI+A+    KG E +  E        VVTE DI  IV+AWTGIPV K++  ES++LL+MEETLH R+IGQDEAV A+S+AIRRARVGLKNPNRPIASFIFSGPTGVGK++
Sbjct:  346 TIEILYGLRDRYEKHHKLVISDEALSAAAKFADQYIADRFLPDKAIDLIDEAGSRVRLMNSQLPPAARELDKELREILKQKDEAVRSQDFETAGQLRDREMEIKAQIAAIAHSKKGDEENTKEVS------VVTEEDIAQIVAAWTGIPVNKMTRSESEKLLQMEETLHGRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTE 554          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 4.793e-71
Identity = 139/213 (65.26%), Postives = 171/213 (80.28%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI+IL GLR+RYE HH+L  +D AL +AA+ + QYISDRFLPDKAIDLIDEAGSRVRL ++QLP  AREL+KELR + K K+EA+R Q +E A + R REM++KAQI+A+     +  K E +     PVVTE DI  IV+AWTGIPV K++  ES++L++MEETLH R+IGQDEAV A+SRAIRRARVGLKNPNRPIASFIFSGPTGVGK++
Sbjct:  349 TIEILFGLRDRYEKHHQLTMSDGALAAAAKYANQYISDRFLPDKAIDLIDEAGSRVRLLNSQLPPAARELDKELRAVLKTKDEAIRAQKYETAEQYRAREMEIKAQIAAIA----QSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLTKSESEKLMQMEETLHGRIIGQDEAVIAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTE 557          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 6.260e-71
Identity = 139/213 (65.26%), Postives = 170/213 (79.81%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI+IL GLR+RYE HH+L  +D AL +AA+ + QYISDRFLPDKAIDLIDEAGSRVRL ++QLP  AREL+KELR + K K+EA+R Q +E A + R REM++KAQI+A+     +  K E +     PVVTE DI  IV+AWTGIPV K++  ES++L+ MEETLH R+IGQDEAV A+SRAIRRARVGLKNPNRPIASFIFSGPTGVGK++
Sbjct:  349 TIEILFGLRDRYEKHHQLTMSDGALAAAAKYANQYISDRFLPDKAIDLIDEAGSRVRLLNSQLPPAARELDKELRAVLKTKDEAIRAQKYETAEQYRAREMEIKAQIAAIA----QSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLTKSESEKLMHMEETLHGRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTE 557          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.542e-69
Identity = 131/213 (61.50%), Postives = 171/213 (80.28%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI+IL+GLR+RYE HH+L+ +D A+V+AA+LS QYI+DRFLPDKAIDL+DEA SRVRL + +LP  A  L++ELR I K KNE +R  DFE+A + R+RE+++K Q++AL+   KE  + E       P+V E DI +IVS+WTGIPV K++  ES++LL MEETLH R++GQ+EAV A+S+AIRRARVGLKNPNRPIASFIFSGPTGVGK++
Sbjct:  377 TIEILRGLRDRYEAHHRLKISDSAIVAAAKLSDQYIADRFLPDKAIDLVDEASSRVRLMNYKLPPSAEYLDEELRHIQKIKNELIRSGDFEEASQFREREIEVKVQMAALMKAKKEAIEEELALNP--PIVNEDDIANIVSSWTGIPVSKLTKSESEKLLHMEETLHSRIVGQNEAVIAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTE 587          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.114e-62
Identity = 121/213 (56.81%), Postives = 156/213 (73.24%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TIQIL GLR+RYE HH++  TDEA+ +AA LS +YI+DRFLPDKAIDLIDEAGS+VRLR   +P   +ELE++L ++ KEK+ AV+ Q+FEKA  LRD E   + ++    ++ KE      + G     VT  DI  +VS WTG+PV K++ DE+DRLL ME+ LH RVIGQ EAV A+++AIRRAR GLK+P RPI SFIF GPTGVGK++
Sbjct:  350 TIQILNGLRDRYEAHHRVTITDEAIEAAASLSDRYITDRFLPDKAIDLIDEAGSKVRLRSYTVPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDSEQRFREELETTKNQWKE------KQGQTDSEVTMEDIAAVVSTWTGVPVSKLTKDETDRLLNMEKILHDRVIGQSEAVNAVAKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTE 556          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_BACSU (Negative regulator of genetic competence clpC/mecB OS=Bacillus subtilis GN=clpC PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 5.873e-61
Identity = 119/213 (55.87%), Postives = 155/213 (72.77%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            +IQIL+GLR+RYE HH++  TD+A+ +A +LS +YISDRFLPDKAIDLIDEAGS+VRLR    P   +ELE++L ++ KEK+ AV+ Q+FEKA  LRD E  L+ Q+       KE      + G     VT  DI  +VS+WTG+PV K++  E+D+LL ME  LH RVIGQDEAV A+++A+RRAR GLK+P RPI SFIF GPTGVGK++
Sbjct:  347 SIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKE------KQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553          
The following BLAST results are available for this feature:
BLAST of CX296693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPAB_SOLLC4.903e-10892.49ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC2.691e-10692.06ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PEA2.518e-10487.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA5.806e-10188.26ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH1.440e-7568.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU4.793e-7165.26ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE6.260e-7165.26ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA1.542e-6961.50ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_OCEIH3.114e-6256.81Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]
CLPC_BACSU5.873e-6155.87Negative regulator of genetic competence clpC/mecB... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05801G05SK FerrChloL1 Citrus clementina cDNA clone C05801G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296693 ID=CX296693; Name=CX296693; organism=Citrus clementina; type=EST; length=648bp
TGGATGAACCATACAAATTTTGAAAGGGCTTCGAGAGCGATATGAAATTC
ACCACAAGCTTCGTTACACTGATGAAGCACTAGTTTCTGCTGCTCAGTTG
TCATACCAGTACATCAGTGACCGTTTTCTCCCTGATAAAGCTATTGATTT
GATTGATGAAGCTGGTTCTCGGGTTCGTCTTCGTCATGCACAGCTCCCCG
AGGAAGCTAGAGAGCTTGAAAAAGAGCTCAGGCAGATAACTAAGGAGAAG
AATGAGGCTGTTCGTGGCCAAGACTTTGAAAAGGCTGGAGAGTTACGTGA
TAGAGAAATGGACCTTAAGGCTCAGATATCTGCTCTTGTCGATAAAGGCA
AAGAGATGAGCAAGGCAGAGACTGAAGCAGGGGATGTTGGTCCTGTTGTG
ACTGAAGTGGACATTCAACACATTGTCTCAGCTTGGACGGGCATTCCGGT
TGAAAAAGTCTCGACTGATGAATCTGATCGCCTCCTCAAGATGGAAGAGA
CCCTTCACAAGAGAGTTATTGGTCAGGACGAAGCTGTCAAAGCTATTAGT
CGTGCTATCCGGCGTGCACGTGTTGGACTCAAAAACCCCAATCGACCAAT
TGCTAGTTTCATCTTTTCTGGTCCAACTGGTGTCGGGAAGTCTGACTG
back to top