CX296694

Overview
NameCX296694
Unique NameCX296694
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig752 contig Ccv1_Contig752:4..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 216.853 bits (551), Expect = 7.574e-56
Identity = 106/118 (89.83%), Postives = 112/118 (94.92%), Query Frame = -2
Query:  300 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 653
            TGQKNKITITNDKGRLSKDEIEKMVQEAEKYK+EDEEHKKKVEAKN LENYAYNMRN ++DEKIG KL  ADKKKIED+I+QAIQWL+ NQLAEADEFEDKMKELESICNPIIAKMYQ
Sbjct:  501 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIQDEKIGEKLPAADKKKIEDSIEQAIQWLEGNQLAEADEFEDKMKELESICNPIIAKMYQ 618          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: HSP71_SOLLC (Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.759e-55
Identity = 113/148 (76.35%), Postives = 116/148 (78.38%), Query Frame = -2
Query:  210 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQXXXXXXXXXXXXXXXXXXXXXXXPKIEEVD 653
            TGQKNKITITNDKGRLSK+EIEKMVQEAEKYKAEDEE KKKVEAKN LENYAYNMRN VKDEKIGSKL   DKKKIEDA+DQAI WL+SNQLAE DEFEDKMKELE ICNPIIAKMYQ                       PKIEEVD
Sbjct:  503 TGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEELKKKVEAKNSLENYAYNMRNTVKDEKIGSKLSSDDKKKIEDAVDQAISWLESNQLAEVDEFEDKMKELEGICNPIIAKMYQGAGGDAGVPMDDDAPPSGGSSAGPKIEEVD 650          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 2.436e-54
Identity = 104/118 (88.14%), Postives = 111/118 (94.07%), Query Frame = -2
Query:  300 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 653
            TGQKNKI ITNDKGRLSK+EIEKMVQEAEKYK+EDEEHKKKVE+KN LENYAYNMRN VKDEKIG+KL  ADKKKIE+AID +IQWLD NQLAEADEF+DKMKELESICNPIIAKMYQ
Sbjct:  501 TGQKNKIRITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVESKNALENYAYNMRNIVKDEKIGAKLSEADKKKIEEAIDASIQWLDGNQLAEADEFDDKMKELESICNPIIAKMYQ 618          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.156e-54
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = -2
Query:  300 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 653
            TGQKNKITITNDKGRLSK+EIEKMVQEAEKYK+EDEEHKKKVEAKN LENYAYNMRN +KDEKI SKL   D+ KIEDAI+QAIQWLD NQLAEA+EFEDKMKELES+CNPIIAKMYQ
Sbjct:  501 TGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDEKIASKLSADDRTKIEDAIEQAIQWLDGNQLAEAEEFEDKMKELESLCNPIIAKMYQ 618          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 4.156e-54
Identity = 100/118 (84.75%), Postives = 111/118 (94.07%), Query Frame = -2
Query:  300 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 653
            TG+KNKITITNDKGRLSK++IEKMVQEAEKYK+EDEEHKKKVEAKN LENYAYNMRN ++DEKIG KL  ADKKK+ED+I++AIQWLD NQL EADEFEDKMKELES+CNPIIAKMYQ
Sbjct:  501 TGKKNKITITNDKGRLSKEDIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIRDEKIGEKLPAADKKKVEDSIEEAIQWLDGNQLGEADEFEDKMKELESVCNPIIAKMYQ 618          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.579e-53
Identity = 102/118 (86.44%), Postives = 112/118 (94.92%), Query Frame = -2
Query:  300 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 653
            TGQKNKITITNDKGRLSK+EIE+MVQEAEKYK+EDEE KKKVEAKN LENYAYNMRN +KD+KI S+L  ADKK+IEDAID+AI+WLD+NQLAEADEFEDKMKELESICNPIIAKMYQ
Sbjct:  501 TGQKNKITITNDKGRLSKEEIERMVQEAEKYKSEDEELKKKVEAKNALENYAYNMRNTIKDDKINSQLSAADKKRIEDAIDEAIKWLDNNQLAEADEFEDKMKELESICNPIIAKMYQ 618          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.694e-53
Identity = 101/118 (85.59%), Postives = 110/118 (93.22%), Query Frame = -2
Query:  300 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 653
            TGQKNKITITNDKGRLSKDEIEKMVQEAEKYK+EDEEHKKKV+AKN LENYAYNMRN ++DEKIG KL   DKKKIED+I+ AI+WL++NQLAE DEFEDKMKELESICNPIIAKMYQ
Sbjct:  501 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVDAKNALENYAYNMRNTIRDEKIGEKLAGDDKKKIEDSIEAAIEWLEANQLAECDEFEDKMKELESICNPIIAKMYQ 618          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: HSP70_MAIZE (Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=3 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.132e-51
Identity = 100/117 (85.47%), Postives = 106/117 (90.60%), Query Frame = -2
Query:  303 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 653
            TGQKNKITITNDKGRLSK+EIEKMVQEAEKYKAEDEE KKKV+AKN LENYAYNMRN +KD+KI SKL   DKKKIEDA+D AI WLDSNQLAE +EFEDKMKELE ICNPIIAKMY
Sbjct:  497 TGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEVKKKVDAKNALENYAYNMRNTIKDDKIASKLPAEDKKKIEDAVDGAISWLDSNQLAEVEEFEDKMKELEGICNPIIAKMY 613          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: HSP70_SOYBN (Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.866e-49
Identity = 93/117 (79.49%), Postives = 104/117 (88.89%), Query Frame = -2
Query:  300 GQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 650
            G KNKITITNDKGRLSK+EIEKMV++AE+YKAEDEE KKKVEAKN LENYAYNMRN +KDEKIG KL P +K+KIE A++ AIQWL+ NQ+AE DEFEDK KELE ICNPIIAKMYQ
Sbjct:  501 GVKNKITITNDKGRLSKEEIEKMVKDAERYKAEDEEVKKKVEAKNSLENYAYNMRNTIKDEKIGGKLSPDEKQKIEKAVEDAIQWLEGNQMAEVDEFEDKQKELEGICNPIIAKMYQ 617          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: HSP70_DAUCA (Heat shock 70 kDa protein OS=Daucus carota GN=HSP70 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.427e-47
Identity = 89/117 (76.07%), Postives = 103/117 (88.03%), Query Frame = -2
Query:  300 GQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 650
            G KNKITITND GRLSKDEIEK+V+EAEKYKAEDEE KKKVEAKN LENYAYNMRN +KD+KI  KLD  DK+KIE A+++AI+WL+ NQLAE DE EDK+KELE +CNPIIA++YQ
Sbjct:  504 GVKNKITITNDNGRLSKDEIEKLVKEAEKYKAEDEEVKKKVEAKNALENYAYNMRNTIKDDKIPGKLDAGDKEKIETAVNEAIEWLEKNQLAEVDELEDKLKELEGLCNPIIARLYQ 620          
The following BLAST results are available for this feature:
BLAST of CX296694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
HSP71_ARATH7.574e-5689.83Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP71_SOLLC3.759e-5576.35Heat shock cognate 70 kDa protein 1 OS=Solanum lyc... [more]
HSP7E_SPIOL2.436e-5488.14Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP72_SOLLC4.156e-5487.29Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP72_ARATH4.156e-5484.75Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP7C_PETHY1.579e-5386.44Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP73_ARATH2.694e-5385.59Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP70_MAIZE1.132e-5185.47Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=... [more]
HSP70_SOYBN6.866e-4979.49Heat shock 70 kDa protein OS=Glycine max GN=HSP70 ... [more]
HSP70_DAUCA6.427e-4776.07Heat shock 70 kDa protein OS=Daucus carota GN=HSP7... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05801G06SK FerrChloL1 Citrus clementina cDNA clone C05801G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296694 ID=CX296694; Name=CX296694; organism=Citrus clementina; type=EST; length=654bp
TTTTTTTTTTTTTTTTTTTTAGGGACCGAAAAATATTCATTATATAAATT
GGTCCGAATTAAAAGTAAAATTTGAAAAATAAAAAGAAAAGGAAAAATTA
ATATTCCTCCTAAGGCTAAAACAACATAAGATAAAAACCAAACGTCCAGT
TTTCCCACCGTCAAAAAACCGACCTCCCACAAACACAACAAAATAAAACT
GGAAGCTTAGTCAACTTCCTCAATCTTGGGACCGGGGGCACTGCCACCAG
CTGGAGGAGCATCATCATCCATGCCACCGCCCATATCACCACCAGCACCT
TGATACATCTTGGCAATGATGGGATTGCAAATGCTCTCAAGCTCCTTCAT
CTTGTCTTCAAATTCATCGGCCTCAGCCAGCTGGTTGCTATCAAGCCATT
GAATTGCCTGATCAATGGCATCCTCAATCTTCTTCTTGTCAGCTGGATCA
AGTTTGGAGCCGATCTTCTCGTCCTTGACAGGGTTCCTCATATTGTAGGC
ATAGTTTTCCAAGGGATTCTTGGCCTCGACCTTCTTCTTGTGCTCCTCGT
CTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATCTTCTCAATTTCATCC
TTTGACAATCTACCCTTATCGTTGGTGATTGTGATCTTGTTCTTTTGGCC
CGTT
back to top