CX296700

Overview
NameCX296700
Unique NameCX296700
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length386
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10822 contig Ccv1_Contig10822:642..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296700 vs. ExPASy Swiss-Prot
Match: PROSC_HUMAN (Proline synthetase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.465e-22
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 2
Query:    2 EHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPPK 262
            EH++  CPNLEF GLMTIG    D +  P  +F+ L   R E+CK L IP +Q +LSMGMS DF+ A+E+GSTNVRIGSTIFG R+Y  K
Sbjct:  166 EHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERDYSKK 255          
BLAST of CX296700 vs. ExPASy Swiss-Prot
Match: PROSC_MOUSE (Proline synthetase co-transcribed bacterial homolog protein OS=Mus musculus GN=Prosc PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.597e-21
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 2
Query:    2 EHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPPK 262
            EH+  +CP+LEF GLMTIG    D +  P  +F+ L   R E+C+ LGIP EQ +LSMGMS DF+ AIE+GSTNVRIGSTIFG R+Y  K
Sbjct:  166 EHIKASCPSLEFVGLMTIGSFGHDLSQGPNPDFQRLLTLRRELCEKLGIPVEQVELSMGMSMDFQHAIEVGSTNVRIGSTIFGERDYSKK 255          
BLAST of CX296700 vs. ExPASy Swiss-Prot
Match: PROSC_BOVIN (Proline synthetase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.597e-21
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 2
Query:    2 EHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPPK 262
            EH++  CP+LEF GLMTIG    D +  P  +F+ L   R E+C+ LG P EQ +LSMGMS DF+ AIE+GSTNVRIGSTIFG R+Y  K
Sbjct:  166 EHINAKCPSLEFVGLMTIGSFGHDLSQGPNPDFQVLLSLREELCRKLGAPPEQVELSMGMSVDFQHAIEVGSTNVRIGSTIFGERDYSKK 255          
BLAST of CX296700 vs. ExPASy Swiss-Prot
Match: PROSC_PONAB (Proline synthetase co-transcribed bacterial homolog protein OS=Pongo abelii GN=PROSC PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.012e-21
Identity = 52/90 (57.78%), Postives = 63/90 (70.00%), Query Frame = 2
Query:    2 EHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPPK 262
            EH++  CPNLEF GLMTIG    D +  P  +F+ L   R E+CK L IP +Q +LSMGMS DF+ AIE+GSTNVRIGS IFG R+Y  K
Sbjct:  166 EHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSVDFQHAIEVGSTNVRIGSMIFGERDYSKK 255          
BLAST of CX296700 vs. ExPASy Swiss-Prot
Match: PROSC_DICDI (Proline synthetase co-transcribed bacterial homolog protein OS=Dictyostelium discoideum GN=prosc PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.861e-18
Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 2
Query:   17 NCPN-LEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPPK 262
            NC N L F GLMTIG P+ T    +FK L  C++ + K L IP +  +LSMGMS DFE AIE GST+VR+GS IFG R+Y  K
Sbjct:  172 NCKNSLNFLGLMTIGNPNATPDQPDFKCLVDCKNNISKQLNIPLDSIELSMGMSHDFEPAIEFGSTSVRVGSAIFGERDYSNK 254          
BLAST of CX296700 vs. ExPASy Swiss-Prot
Match: PROSC_CAEEL (Proline synthetase co-transcribed bacterial homolog protein OS=Caenorhabditis elegans GN=F09E5.8 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 2
Query:    2 EHVSQNCPNLEFCGLMTIGMPDYT-STPEN--FKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPPK 262
            E + + C NL+F G MTIG  D + ++ EN  F+ L K R    +  G   +  +LSMGMS DF  AI  G+T+VR+GS +FGAREY  K
Sbjct:  155 EFIRKECQNLKFDGFMTIGSFDNSHASGENPDFEKLFKVRQTWAEQTGESADSVELSMGMSDDFLQAIHQGATSVRVGSKLFGAREYKNK 244          
The following BLAST results are available for this feature:
BLAST of CX296700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PROSC_HUMAN9.465e-2257.78Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_MOUSE3.597e-2158.89Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_BOVIN3.597e-2157.78Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_PONAB8.012e-2157.78Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_DICDI4.861e-1855.42Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_CAEEL3.986e-1245.56Proline synthetase co-transcribed bacterial homolo... [more]
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Properties
Property NameValue
Genbank descriptionC05801G12SK FerrChloL1 Citrus clementina cDNA clone C05801G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296700 ID=CX296700; Name=CX296700; organism=Citrus clementina; type=EST; length=386bp
TGAACATGTTAGTCAAAACTGTCCGAATCTTGAGTTTTGTGGCCTAATGA
CAATTGGGATGCCAGATTACACGTCAACCCCGGAGAACTTCAAGACATTA
GCGAAATGCAGAAGTGAGGTATGCAAGGCTCTTGGAATACCAGAAGAGCA
ATGTGATCTGTCTATGGGAATGTCTGGTGATTTCGAGCTTGCTATTGAAA
TGGGGAGCACCAATGTCAGGATTGGATCCACAATATTTGGTGCAAGGGAA
TATCCGCCGAAGAACTAAACTTTTTTTTCACCTGTTCTGAAAACGTTGGC
TATTGTTATGTATTTATCTTAATGTACTGAAACTAGAGTATAGTAGATTA
ATCATATTTTTTATGCACTAAAAAAAAAAAAAAAAA
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