CX296701

Overview
NameCX296701
Unique NameCX296701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9879 contig Ccv1_Contig9879:1..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 3.614e-76
Identity = 120/151 (79.47%), Postives = 136/151 (90.07%), Query Frame = 1
Query:  139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 591
            KS+ AFP TKK NND +S+ SNGGRVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI YL+R+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+IGFDN RQVQCISF+ AKPPGV
Sbjct:   30 KSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          

HSP 2 Score: 34.6538 bits (78), Expect = 3.614e-76
Identity = 15/25 (60.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query:   62 ISSTTVATANRASLAQASMVAPFTG 136
            ISS+ +AT NR +  QAS+ APFTG
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTG 28          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 6.712e-75
Identity = 119/151 (78.81%), Postives = 133/151 (88.08%), Query Frame = 1
Query:  139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 591
            KS+SAFP T+KTNNDITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR   IPCLEFELE G+VYREH+ SPGYYDGRYWTMWKLPM+GC D++QVLKE+ E +K YP +F+RIIGFDNKRQVQ ISF+A KPPGV
Sbjct:   32 KSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182          

HSP 2 Score: 42.3578 bits (98), Expect = 6.712e-75
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 2
Query:   47 MASSMISSTTVATANRASLAQASMVAPFT 133
            MA SMISS TVA  +RAS AQ+SMVAPFT
Sbjct:    1 MACSMISSATVAAVSRASPAQSSMVAPFT 29          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.489e-74
Identity = 115/149 (77.18%), Postives = 131/149 (87.92%), Query Frame = 1
Query:  139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 585
            KS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YL+  GWIPCLEFELE  +VYRE++ SPGYYDGRYW MWKLPM+GCTDATQVL E+ E  K YP S +RIIGFDNKRQVQCISF+A KPP
Sbjct:   32 KSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          

HSP 2 Score: 47.3654 bits (111), Expect = 1.489e-74
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 2
Query:   47 MASSMISSTTVATANRASLAQASMVAPFTG 136
            MASSMISS TVAT +RA+ AQA+MVAPFTG
Sbjct:    1 MASSMISSATVATVSRATPAQATMVAPFTG 30          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 5.135e-72
Identity = 112/148 (75.68%), Postives = 130/148 (87.84%), Query Frame = 1
Query:  139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 582
            KSS+ FP TKKTNNDITSIASNGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YL+R GWIPCLEFELEKG+VYRE+H SPGYYDGRYWTMW+LP++G TD++QVLKE+ + + EYP SF+RIIGFDN RQVQCISF+A  P
Sbjct:   30 KSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177          

HSP 2 Score: 38.891 bits (89), Expect = 5.135e-72
Identity = 18/27 (66.67%), Postives = 22/27 (81.48%), Query Frame = 2
Query:   56 SMISSTTVATANRASLAQASMVAPFTG 136
            ++ISS  V T NRAS AQA++VAPFTG
Sbjct:    2 ALISSAAVTTVNRASSAQANLVAPFTG 28          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.527e-71
Identity = 112/151 (74.17%), Postives = 132/151 (87.42%), Query Frame = 1
Query:  139 KSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 588
            KS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:   30 KSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          

HSP 2 Score: 39.6614 bits (91), Expect = 2.527e-71
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 2
Query:   47 MASSMISSTTVATANRASLAQASMVAPFTG 136
            MASS++SS  VAT  R+++AQASMVAPFTG
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTG 28          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 4.297e-71
Identity = 115/149 (77.18%), Postives = 130/149 (87.25%), Query Frame = 1
Query:  139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 585
            KSS+AFP T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD  L KE+ YLLR+ WIPC+EFELE G+VYREH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP
Sbjct:   28 KSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          

HSP 2 Score: 34.6538 bits (78), Expect = 4.297e-71
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 2
Query:   47 MASSMISSTTVATANRASLAQASMVAPFTG 136
            MASSM+SS  V T    S AQA+MVAPFTG
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTG 26          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 5.605e-71
Identity = 114/154 (74.03%), Postives = 133/154 (86.36%), Query Frame = 1
Query:  124 PLHRPKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 585
            P +  KSS+AFPAT+K NNDITSI SNGGRV CM+VWPP G KKFETLSYLP L+D  L KE+ YL+R+ WIPC+EFELE G+VYREH +SPGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   23 PFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176          

HSP 2 Score: 33.113 bits (74), Expect = 5.605e-71
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 2
Query:   47 MASSMISSTTVATANRASLAQASMVAPFTG 136
            MASSM+SS T+     AS AQA+MVAPF G
Sbjct:    1 MASSMLSSATMV----ASPAQATMVAPFNG 26          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 7.309e-71
Identity = 113/150 (75.33%), Postives = 129/150 (86.00%), Query Frame = 1
Query:  139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 588
            KS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL EI YLL+SGW+PCLEFE E+G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:   30 KSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          

HSP 2 Score: 38.1206 bits (87), Expect = 7.309e-71
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 2
Query:   47 MASSMISSTTVATANRASLAQASMVAPFTG 136
            MASS++SS  VAT  R+++AQA+MVAPFTG
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTG 28          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 9.532e-71
Identity = 115/149 (77.18%), Postives = 130/149 (87.25%), Query Frame = 1
Query:  139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 585
            KSS+AFP T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD  L KE+ YLLR+ WIPC+EFELE G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++ +RIIGFDN RQVQCISF+A KPP
Sbjct:   28 KSSAAFPVTRKTNTDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKPP 176          

HSP 2 Score: 33.113 bits (74), Expect = 9.532e-71
Identity = 19/30 (63.33%), Postives = 21/30 (70.00%), Query Frame = 2
Query:   47 MASSMISSTTVATANRASLAQASMVAPFTG 136
            MASSM+SS  V T    S  QA+MVAPFTG
Sbjct:    1 MASSMLSSAAVVT----SQLQATMVAPFTG 26          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 9.532e-71
Identity = 113/149 (75.84%), Postives = 129/149 (86.58%), Query Frame = 1
Query:  139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 585
            KSS++FP T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP LSD  L KE+ YLLR+ WIPC+EFELE G+VYREH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP
Sbjct:   28 KSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          

HSP 2 Score: 35.8094 bits (81), Expect = 9.532e-71
Identity = 21/30 (70.00%), Postives = 22/30 (73.33%), Query Frame = 2
Query:   47 MASSMISSTTVATANRASLAQASMVAPFTG 136
            MASSM SST V T    S AQA+MVAPFTG
Sbjct:    1 MASSMFSSTAVVT----SPAQATMVAPFTG 26          
The following BLAST results are available for this feature:
BLAST of CX296701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS_LACSA3.614e-7679.47Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE6.712e-7578.81Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR1.489e-7477.18Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA5.135e-7275.68Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU2.527e-7174.17Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3B_ARATH4.297e-7177.18Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS1A_ARATH5.605e-7174.03Ribulose bisphosphate carboxylase small chain 1A, ... [more]
RBS8_NICPL7.309e-7175.33Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS_RAPSA9.532e-7177.18Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2B_ARATH9.532e-7175.84Ribulose bisphosphate carboxylase small chain 2B, ... [more]

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Properties
Property NameValue
Genbank descriptionC05801H01SK FerrChloL1 Citrus clementina cDNA clone C05801H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296701 ID=CX296701; Name=CX296701; organism=Citrus clementina; type=EST; length=729bp
GAGGCCTCGCTGCCGAATTCGGCACGAGGAGAAGGAGCAAGTACCAATGG
CTTCCTCAATGATCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGC
CTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCCAAGTCTTCTTCT
GCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAG
CAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGA
AGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTG
CTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGA
ATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAGCTCACCAG
GATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGG
TGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGA
ATACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGTCAAG
TGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCGTCTAGGTTCCC
AATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGTG
TAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAAT
TTGTACTTAGGCTGCTGTTGCTGCTGCTC
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