CX296710

Overview
NameCX296710
Unique NameCX296710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296710_ssr31 microsatellite CX296710_ssr31:31..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10197 contig Ccv1_Contig10197:17..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX296710 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 73/175 (41.71%), Postives = 83/175 (47.43%), Query Frame = 1 
Query:  154 EANLHCLEPWTKRKRSKRPHNPPTEEEYLALCLVMLARGXXXXXXXXXXXXXXXXXQRQKXXXXXXXXXXXXXDQKLVFKCSVCDKAFSSYQALGGHKASHR--KGSGGGDEHXXXXXXXXXXXXXXXGV-----------PNATGRTHECSICHKSFPTGQALGGHKRCHYDGG 639
            E + H L+ W KRKRS+R  +   EEE LALCL+ML+RG                 QR +             +    FKCSVC K+FSSYQALGGHK SHR  + S   D                                AT R H CSIC K FPTGQALGGHKR HYDGG
Sbjct:   34 EESGHVLQGWAKRKRSRRQRS---EEENLALCLLMLSRGGK---------------QRVQAPQPESFAAPVPAE----FKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKRKHYDGG 186
The following BLAST results are available for this feature:
BLAST of CX296710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT1.146e-2341.71Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionC05801H11SK FerrChloL1 Citrus clementina cDNA clone C05801H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296710 ID=CX296710; Name=CX296710; organism=Citrus clementina; type=EST; length=704bp
CCGAATTCGGCACGAGGCTGAAATTAATCCCTCTCTCTCTCTCTCGCTCG
CTCTTTCACACTCACTCTTGGTTTTAGATTCAAAAGAGTAACGGAGATGG
CACTGGAAGCTCTCAACTCTCCAACTACTTCGACGCCGCCGTTTCACTTC
GAAGAAGCTAATCTTCACTGCCTTGAGCCATGGACCAAACGCAAGCGCTC
AAAGCGTCCACACAATCCTCCAACTGAAGAAGAGTATCTCGCGCTCTGCC
TCGTCATGCTTGCACGTGGCACAACCTCCACCGCCGCCTTAACTAACTGC
AACACGACCACCACCGCCTCACAGCGACAGAAGTCTCCTGCTCCATCTAC
TGCTGCAACGACGTCGTCCTCTGACCAGAAGCTTGTCTTCAAGTGCAGCG
TGTGCGACAAGGCGTTTTCTTCTTACCAAGCCTTGGGTGGTCACAAGGCC
AGCCACCGTAAGGGATCTGGGGGCGGCGACGAACACTCCGCTTCCACTAC
CACCAACACCAACGCAACCGCCACGACCACCGGCGTACCGAACGCCACTG
GTAGGACCCACGAGTGTTCCATCTGTCACAAGTCCTTCCCCACCGGCCAA
GCCTTGGGCGGACACAAACGTTGTCACTACGATGGCGGCGAGAAGAGCGG
AGTGACGTCATCCGGGTCCAGTAGCACTCACAGCCAAGTCAGCCACCGTG
ACTT
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