CX296714

Overview
NameCX296714
Unique NameCX296714
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length182
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296714 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 37/55 (67.27%), Postives = 39/55 (70.91%), Query Frame = 2
Query:   17 PRPPIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 181
            P   IDFFGALRARVYDDEVRKW          K LVNSKE  PTFEQP+MT+EK
Sbjct:  338 PGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEK 392          
BLAST of CX296714 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.217e-13
Identity = 36/55 (65.45%), Postives = 39/55 (70.91%), Query Frame = 2
Query:   17 PRPPIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 181
            P   IDFFGALRARVYDDEVRKW          K LVNSKE  PTFEQP+MT++K
Sbjct:  338 PGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDK 392          
BLAST of CX296714 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.589e-13
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 2
Query:   17 PRPPIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 181
            P   IDFFGALRARVYDDEVRKW          ++LVNSKE+ PTF+QP+MT+EK
Sbjct:  335 PGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEK 389          
BLAST of CX296714 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.075e-13
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 2
Query:   17 PRPPIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 181
            P   IDFFGALRARVYDDEVRKW          K LVNSKE  PTF+QP+MT++K
Sbjct:  342 PGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDK 396          
BLAST of CX296714 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.540e-13
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 2
Query:   17 PRPPIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 181
            P   IDFFGALRARVYDDEVRKW          K LVNS+E  PTF+QP+MT+EK
Sbjct:  325 PGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEK 379          
BLAST of CX296714 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.038e-13
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 2
Query:   17 PRPPIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 181
            P   IDFFGALRARVYDDEVRKW          K LVNSKE  PTF+QP+M+++K
Sbjct:  340 PGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDK 394          
BLAST of CX296714 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 7.886e-13
Identity = 35/55 (63.64%), Postives = 38/55 (69.09%), Query Frame = 2
Query:   17 PRPPIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 181
            P   IDFFGALRARVYDDEVRKW          K LVNS+E  P FEQP+MT+EK
Sbjct:  329 PGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEK 383          
BLAST of CX296714 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 7.886e-13
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 2
Query:   17 PRPPIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 181
            P   IDFFGALRARVYDDEVR+W          + LVNSKE  PTFEQP++T+EK
Sbjct:  334 PGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEK 388          
BLAST of CX296714 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.345e-12
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 2
Query:   17 PRPPIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 181
            P   IDFFGALRARVYDDEVRKW          + L+NS++  PTFEQP+MT+EK
Sbjct:  337 PGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEK 391          
BLAST of CX296714 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.294e-12
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = 2
Query:   17 PRPPIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 181
            P   IDFFGALRARVY DEVRKW          K LVNSKE  P+FEQP+MT++K
Sbjct:  338 PGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDK 392          
The following BLAST results are available for this feature:
BLAST of CX296714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RCA_MALDO5.461e-1467.27Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR1.217e-1365.45Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.589e-1363.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU2.075e-1363.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU3.540e-1363.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU6.038e-1361.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ7.886e-1363.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE7.886e-1361.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.345e-1260.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR2.294e-1261.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC05802A03SK FerrChloL1 Citrus clementina cDNA clone C05802A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296714 ID=CX296714; Name=CX296714; organism=Citrus clementina; type=EST; length=182bp
AGCTTGTCGACACCTTCCCCGGCCACCCATTGATTTCTTTGGAGCCCTGA
GGGCCAGAGTCTATGATGATGAGGTGAGGAAGTGGATCTCTGGTGTTGGT
GTTGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAAC
ATTCGAGCAACCAAGGATGACAATGGAGAAGC
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