CX296722

Overview
NameCX296722
Unique NameCX296722
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296722_ssr130 microsatellite CX296722_ssr130:130..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1039 contig Ccv1_Contig1039:10..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296722 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 47/94 (50.00%), Postives = 57/94 (60.64%), Query Frame = 3
Query:  162 MARSFSNAKLFSAFVADGISNSIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFL 443
            MARSF+N K+ SA VADG SN+  + G++AA+                M+ K  EE     EKVSWVPDPVTG YRPEN  NE+D AD+RA  L
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93          
BLAST of CX296722 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.819e-13
Identity = 45/96 (46.88%), Postives = 55/96 (57.29%), Query Frame = 3
Query:  162 MARSFSNAKLFSAFVADGISNSIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 449
            MARS   AKL  A VADGIS SI +RGY+AA+                 L+    E +G+S   +W PDP+TG YRPEN A E+D A+LR M L H
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKND--LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLLNH 92          
BLAST of CX296722 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 41/100 (41.00%), Postives = 53/100 (53.00%), Query Frame = 3
Query:  162 MARSFSNAKLFSAFVADGISNSIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSE----KVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 449
            MARS S+ KL  A + DG+  SI +RGYS A                 + ++ A + + SSE      +W PDPVTG YRPEN   E+D A+LR M L H
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNH 100          
BLAST of CX296722 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.025e-11
Identity = 41/100 (41.00%), Postives = 51/100 (51.00%), Query Frame = 3
Query:  162 MARSFSNAKLFSAFVADGISNSIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSE----KVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 449
            MARS S+ K   A V D +  SI +RGYS A                 + ++ A + + SSE      +W PDPVTG YRPEN   E+D ADLR M L H
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNH 100          
The following BLAST results are available for this feature:
BLAST of CX296722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ARG2_PHAAU2.469e-1750.00Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
LEA5_CITSI4.819e-1346.88Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI3.124e-1241.00Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI2.025e-1141.00Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionC05802A12SK FerrChloL1 Citrus clementina cDNA clone C05802A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296722 ID=CX296722; Name=CX296722; organism=Citrus clementina; type=EST; length=584bp
GAGGCCTCGCGCCGAATTCGGCACGAGGTTTCGCGCTACGAAGAGGGAAG
TTTCTTTAGCTGCTGTTGAAGGCTTTTCGATAGAAAGAATAGAAGGAAAT
TGCTTTCTGCAGCAGCGTTAAGATCTCTTATCATCATCATCATCCCACAT
AACTAAGAAAAATGGCTCGCTCTTTCTCAAACGCTAAGCTTTTCTCTGCT
TTCGTCGCTGACGGAATCTCTAACTCCATCTACAAAAGAGGATACTCGGC
GGCATCACAAGGCGCTGTGTCGCGGGCAACAGGGGGAGCTAGGAGTGCTG
CTGCGATGTTGAAGAAACCAGCAGAAGAGATGACAGGATCCAGTGAGAAG
GTCTCGTGGGTCCCAGACCCAGTCACTGGTGTCTACAGGCCGGAGAATCT
CGCCAACGAGCTCGATGGGGCCGACCTCAGAGCCATGTTCTTGAAGCACA
ACAACTGATCATCAAAATTAATAAGTATTATTATTAATATATATTAATTC
GGACATGGAAACTGAGGAAGGACGAAAGAAAAATTAAAAAAAGATTAAAA
AGGGATTTGTTCTGATGTGGTCAGCCGCATGAGC
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