CX296724

Overview
NameCX296724
Unique NameCX296724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX296724 vs. ExPASy Swiss-Prot
Match: CHAC2_XENLA (Cation transport regulator-like protein 2 OS=Xenopus laevis GN=chac2 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.888e-11
Identity = 32/81 (39.51%), Postives = 49/81 (60.49%), Query Frame = 3 
Query:  273 PSQPALT--GVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIELANEVRK 503
            P  P++    V+++  T D   N  YLGPAPLE++A QI  AVGP G N +YLF+L  ++ ++  E  D+++  L   VR+
Sbjct:   96 PKDPSIQPFNVLLYIGTCD---NPNYLGPAPLEDIAEQILNAVGPSGRNTEYLFELANSLRNLVPEDADEHLFSLEKLVRQ 173

HSP 2 Score: 33.4982 bits (75), Expect = 1.888e-11
Identity = 24/63 (38.10%), Postives = 32/63 (50.79%), Query Frame = 2 
Query:    2 PQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRE-CEYDSKTLVDFYRVRSFSP 187
            P  P R  TL +  E   WGVAY +  G E+E  A  YL+ RE   Y + T+V + +  S  P
Sbjct:   43 PGKPGRVVTLVEDPEGCVWGVAYRLPEGKEEEVKA--YLDFREKGGYRTSTVVFYPKDPSIQP 103
The following BLAST results are available for this feature:
BLAST of CX296724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CHAC2_XENLA1.888e-1139.51Cation transport regulator-like protein 2 OS=Xenop... [more]
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Properties
Property NameValue
Genbank descriptionC05802B02SK FerrChloL1 Citrus clementina cDNA clone C05802B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296724 ID=CX296724; Name=CX296724; organism=Citrus clementina; type=EST; length=729bp
CCCTCAACACCCGGCTAGAACTTGCACGCTGGAAAAATCTCAAGAAACCA
TTTGTTGGGGTGTTGCTTATTGTGTCCGAGGAGGTCCTGAAAAGGAAAGA
CTCGCTATGGAGTATTTGGAACGAAGAGAATGCGAGTACGACTCTAAGAC
CCTTGTAGACTTTTACAGGGTGAGAAGTTTTTCACCACAATATTTTTAAA
CTTTGCTTCTTTGGTATCTGCAATTTGTTCTTATTTCTTTTGCATGATCC
TTCTTTAATCCAGGAAGGGGAGCCTTCACAGCCGGCTCTAACTGGGGTTA
TAGTTTTCACGTCTACTCCAGACAAAGTATCAAACAAGTATTATCTGGGG
CCTGCTCCATTGGAGGAAATGGCTAGGCAAATTGCAACGGCTGTCGGACC
CTGTGGAAACAATAGAGACTACCTTTTCAAGTTGGAGAAGGCCATGTTTG
ATATTGGTCATGAGGACGACTACATAATAGAGCTGGCAAATGAAGTGAGG
AAAGAGCTTGGAACTGCTGAAAAAGGAATTCTCAAGGAGAGGAAGTTGGT
TGGGTCATCATCCCGCATGCCGCTCACAAAATCTCATATTCCAACCCTTC
AACTGGGTCTACGCCCTGAGGCGGTGGCCATGGATTCATAAGAACACAAG
GCTGACAGACACCATAGGCCTAGGGGACTAATCAAGATATCAAGCACGTA
GCTAACACATCGCCATCATCTTTGTTTTC
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