CX296730
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296730 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.312e-43 Identity = 96/167 (57.49%), Postives = 114/167 (68.26%), Query Frame = 3 Query: 117 AMIPPQPGFGYQQQLVPGMRPGGGPMQNFFVPIXXXXXXXXXXXXXXXXXMQQNQQHVPMMQPQMLPRGRVYRYPSGRGMPDVSMPGVGGMLPIPYGDMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLH 617 AMIPPQPG+GYQQQLVPGMRPGGGP+ +FF+P+ +Q +QQ PMMQ QM PRGR++RYP GRG G G + P G+ + P+ IGALAS L+NA+PEQQRTMLGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLH Sbjct: 445 AMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQRPGGGRRPGG-IQHSQQQNPMMQQQMHPRGRMFRYPQGRG-------GSGDVPPYDMGN-----------NMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLH 592
BLAST of CX296730 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.970e-23 Identity = 72/174 (41.38%), Postives = 95/174 (54.60%), Query Frame = 3 Query: 117 AMIPPQP-GFGYQQQLVPGMRPGGGPMQNFFVPIXXXXXXXXXXXXXXXXXMQQNQQHVPMMQPQMLPRGRVYRY----PSGRGMPDVSMPG--VGGMLPIPYGDMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLH 617 +M+P QP G+G+Q Q +PGMRPG GP NF VP QQH+ Q RY +GR D S+P + ++P+P D +++ + AP+ +PI L S+LA+ASP + MLGE LYPLVE+ EP AKVTGMLLEMDQ E+LH Sbjct: 456 SMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLMHRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPI-DASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILH 624
BLAST of CX296730 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 2.178e-22 Identity = 70/171 (40.94%), Postives = 87/171 (50.88%), Query Frame = 3 Query: 120 MIPPQP-GFGYQQQLVPGMRPGGGPMQNFFVPIXXXXXXXXXXXXXXXXXMQQNQQHVPMMQPQMLPRGRVYRYPSGRGMPDVSMPGVG--GMLPIPYGDMAAMPLRDAPISQPVP--IGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLH 617 ++P QP G+GYQ Q +PGMRPG GP NF +P QQ Q Q + + R+ G G M G++P+P A +P P I LAS LA ASP++ MLG++LYPLVEQ EP AAKVTGMLLEMDQ E+LH Sbjct: 461 LVPSQPMGYGYQVQFMPGMRPGAGP-PNFMMPFPLQRQTQPGPRVGFRRGANNMQQQ---FQQQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILH 627
BLAST of CX296730 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15 Identity = 67/187 (35.83%), Postives = 86/187 (45.99%), Query Frame = 3 Query: 120 MIPPQPGFGYQQQLVPGMRPGGGPMQNFFVPIXXXXXXXXXXXXXXXXXMQQNQQHVPM--MQPQMLPRGRVY-----RYPSGRGMPDVSMPGVGGMLPIPYGD-MAAMPL----------RDAPISQP---VPIGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVL 614 M PPQPG PG PG P Q + N Q +PM MQ +P G Y ++ GRG V PG+GG + YG +PL R + QP P+G L A AL+ A P+QQ+ MLGE LYP ++ +P+ A K+TGMLLEMD TE+L Sbjct: 510 MFPPQPGMMMGMPGRPGQYPGPFPGQQ------------GGRGVGPNQQIPPNFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQV--PGMGGPMRGGYGGGRGGVPLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELL 682
BLAST of CX296730 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14 Identity = 63/186 (33.87%), Postives = 83/186 (44.62%), Query Frame = 3 Query: 126 PPQPGFGYQQQLVPGMRPGGGPMQNFFVPIXXXXXXXXXXXXXXXXXMQQNQQHVP-----MMQPQMLPRGRVYRYPSGRG------MPDVSMPGVGGMLPI------PYGDM---AAMPLRDAPISQPVP-IGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLH 617 PP PG+G Q +PGM P GPM + N Q +P P +P YP G P+ + P GG P+ P G + MP R + P P G L A +LA A+P +Q+ MLGE LYPL+ + +P+ A K+TGMLLEMD E+LH Sbjct: 448 PPMPGYG---QPMPGMPPVRGPMMGY--------PGAPQNMMQSRPRFNPNGQPLPGGVPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLH 622
BLAST of CX296730 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12 Identity = 49/106 (46.23%), Postives = 61/106 (57.55%), Query Frame = 3 Query: 318 RGRVYRYPSGRGMPDVSMPGVGGML--PIPYG----DMAAMPLRDAPISQPVPIGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVL 614 RG+V P G+GM G GG P P G + AA P A + P GAL A AL A+P QQ+ MLGE LYP ++ +P+ A K+TGMLLEMD TE+L Sbjct: 599 RGQVPGMPMGQGMRGPGYQGRGGPQGGPRPQGGRGQNAAAQP---AAGREEAPAGALTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELL 701
BLAST of CX296730 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11 Identity = 55/165 (33.33%), Postives = 73/165 (44.24%), Query Frame = 3 Query: 162 VPGMRPG-GGPMQNFFVPIXXXXXXXXXXXXXXXXXMQQNQQHVPMMQPQMLPRG-RVYRYPSGRGMPDVSM---PGV-GGMLPIPYGDMAAMPLRDAPISQPVPIGALA-------SALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLH 617 +PG + G GGP P+ QQ Q Q M RG R P GMP + PG+ GG P G A R P P G S L+ A+P QQ+ MLGE LYP + +++P+ A K+TGMLLEMD +E+++ Sbjct: 536 MPGQQGGRGGPNAQQMPPMYMPPGMAPGAFPPGPYMNQQYMQLAQAAQQAMGGRGGRGGPMPGMPGMPQAQIAGGPGIRGGQGGFPQGGRGAPGGRGQPPMPGFPQGGRPGGPGVDMSVLSAAAPGQQKQMLGEALYPKIHEMQPELAGKITGMLLEMDNSELIN 700
BLAST of CX296730 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11 Identity = 64/194 (32.99%), Postives = 84/194 (43.30%), Query Frame = 3 Query: 126 PPQPGFGYQQQLVPGMRPGGGPMQNFFVPIXXXXXXXXXXXXXXXXXMQQNQQHVPM--MQ---------PQMLPRGRVYRYPSGRG----MPDVSM----PGVG---GMLPIPYGDMA------AMPLRDAPISQP---VPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVL 614 PPQPG +PG RPG P + N Q +PM MQ PQ + + + R GRG MP++ PG G G +P+ G M AP +P V G A AL+ A P QQ+ MLGE LYP ++ +P+ A K+TGMLLEM+ TE+L Sbjct: 528 PPQPGMVMAG--IPGGRPGQYP--------GPFPGQQGGRGMGPNQQLPPNFQGIPMGAMQGPVPNGMGYPQGMAQVQFGRGAGGRGQVPGMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGRPEEAVAGGLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELL 711
BLAST of CX296730 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11 Identity = 59/189 (31.22%), Postives = 79/189 (41.80%), Query Frame = 3 Query: 129 PQPGFGYQQQLVPGMRPGGGPMQNFFVPIXXXXXXXXXXXXXXXXXMQQNQQHVPMMQPQMLPRGRVYRYPSG-------RGMPDVS-----------MPGVGGMLPIPYGD-MAAMPLRDAPISQPV-------PIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLH 617 P PG Y Q +PGG + + P M Q P QP P G + P G RG P+ + GV G P P G + P+ P ++P P A+ALA ASPE+Q+ MLGE +YP V +P+ A K+TGM+LE+ TE+LH Sbjct: 439 PGPGMYYPQPGAFPGQPGGMVPRPRYAPAGM---------------MPQGMPMAPYGQPGQFPAGMM---PQGYRPARPPRGAPNAAGGPAPPAGARPPTGVNGA-PRPAGQPVPGQPMPRGPAARPAGRPEADQPGALTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLH 608 The following BLAST results are available for this feature:
BLAST of CX296730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296730 ID=CX296730; Name=CX296730; organism=Citrus clementina; type=EST; length=618bpback to top |