CX296752

Overview
NameCX296752
Unique NameCX296752
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length442
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296752 vs. ExPASy Swiss-Prot
Match: MTPB_ARATH (Metal tolerance protein B OS=Arabidopsis thaliana GN=MTPB PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.426e-27
Identity = 56/104 (53.85%), Postives = 77/104 (74.04%), Query Frame = 3
Query:  129 EKLCAATEENQTNLESNSPIKTKMLNINLQGAYLHIMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQR 440
            +++ A  EE + N        +K +NIN+QGAYLH MAD+IQS GVMI G I+WVKP W +VDL CTL+F+AFAL+ T+P+LK IF ILMER P ++++ +L+R
Sbjct:  207 KEVVAEEEEEEMNPLKGEKSSSKEMNINIQGAYLHAMADMIQSLGVMIGGGIIWVKPKWVLVDLICTLVFSAFALAATLPILKNIFGILMERVPRDMDIEKLER 310          
BLAST of CX296752 vs. ExPASy Swiss-Prot
Match: MTPA2_ARATH (Metal tolerance protein A2 OS=Arabidopsis thaliana GN=MTPA2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.811e-21
Identity = 49/106 (46.23%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  141 AATEENQTNLESNSPI------KTKMLNINLQGAYLHIMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQR 440
            AATE +  +    S +      + K  N+N+QGAYLH++ D IQS GVMI G I+W KP W I+DL CTL+F+   L TT+ ML+ I  +LME TP EI+   L++
Sbjct:  208 AATEHHHDSGHDESQLSDVLIEQKKQRNVNIQGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKILDLICTLVFSVIVLGTTIGMLRNILEVLMESTPREIDPTMLEK 313          
BLAST of CX296752 vs. ExPASy Swiss-Prot
Match: MTP1_ARATH (Metal tolerance protein 1 OS=Arabidopsis thaliana GN=MTP1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.988e-21
Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  204 NINLQGAYLHIMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQR 440
            NINLQGAYLH++ D IQS GVMI G I+W  P W IVDL CTL F+   L TT+ M++ I  +LME TP EI+  +L++
Sbjct:  256 NINLQGAYLHVLGDSIQSVGVMIGGAIIWYNPEWKIVDLICTLAFSVIVLGTTINMIRNILEVLMESTPREIDATKLEK 334          
BLAST of CX296752 vs. ExPASy Swiss-Prot
Match: MTPA1_ARATH (Metal tolerance protein A1 OS=Arabidopsis thaliana GN=MTPA1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.533e-20
Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = 3
Query:  150 EENQTNLESNSPIKTKMLNINLQGAYLHIMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQR 440
            E  +  LE +  I+    NIN+QGAYLH++ DLIQS GVMI G ++W  P W ++DL CTL F+   L TT+ ML++I  +LME TP EI+  +L++
Sbjct:  178 ERAEQLLEKSKEIR----NINVQGAYLHVLGDLIQSIGVMIGGGMIWYNPKWKVIDLICTLFFSVIVLGTTIKMLRSILEVLMESTPREIDARQLEK 270          
BLAST of CX296752 vs. ExPASy Swiss-Prot
Match: Y3629_DICDI (Probable zinc transporter protein DDB_G0283629 OS=Dictyostelium discoideum GN=DDB_G0283629 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.320e-15
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = 3
Query:  177 NSPIKTKMLNINLQGAYLHIMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQ 437
            N   K  + NIN+  AY+H++ D  QS GVM+A  I+WV P W I D   TLIF+   L TT+ +L+    +LME  P EI+V+ ++
Sbjct:  359 NGKNKKGVRNINVHSAYIHVLGDCFQSIGVMVASCIIWVHPHWKIADPITTLIFSVIVLGTTIKLLRESLGVLMEGVPPEIDVSEVK 445          
BLAST of CX296752 vs. ExPASy Swiss-Prot
Match: ZNT8_XENLA (Zinc transporter 8 OS=Xenopus laevis GN=slc30a8 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.626e-12
Identity = 32/79 (40.51%), Postives = 53/79 (67.09%), Query Frame = 3
Query:  204 NINLQGAYLHIMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQR 440
            N +++ A++H++ DL QS  V+I+ LI++ KP + I D  CT IF+ F L TTV +L+ +  ILME TP  I+ + +++
Sbjct:  217 NASIRAAFIHVIGDLFQSISVLISALIIYFKPEYKIADPICTFIFSIFVLITTVTVLRDLLNILMEGTPRGIHYSDVKQ 295          
BLAST of CX296752 vs. ExPASy Swiss-Prot
Match: ZNT8_XENTR (Zinc transporter 8 OS=Xenopus tropicalis GN=slc30a8 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.960e-12
Identity = 30/79 (37.97%), Postives = 53/79 (67.09%), Query Frame = 3
Query:  204 NINLQGAYLHIMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQR 440
            N +++ A++H++ DL QS  V+I+ LI++ KP + + D  CT IF+ F L TTV +L+ +  +LME TP  I+ + +++
Sbjct:  216 NASIRAAFIHVIGDLFQSISVLISALIIYFKPEYKMADPICTFIFSIFVLITTVTVLRDLLTVLMEGTPRGIHYSDVKQ 294          
BLAST of CX296752 vs. ExPASy Swiss-Prot
Match: ZNT2_RAT (Zinc transporter 2 OS=Rattus norvegicus GN=Slc30a2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.219e-11
Identity = 27/73 (36.99%), Postives = 50/73 (68.49%), Query Frame = 3
Query:  204 NINLQGAYLHIMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEIN 422
            N +++ A++H++ DL+QS GV++A  I++ KP +  VD  CT +F+   L TT+ +L+ + ++LME TP  ++
Sbjct:  201 NPSVRAAFIHVVGDLLQSVGVLVAAYIIYFKPEYKYVDPICTFLFSILVLGTTLTILRDVILVLMEGTPKGVD 273          
BLAST of CX296752 vs. ExPASy Swiss-Prot
Match: ZNT2_HUMAN (Zinc transporter 2 OS=Homo sapiens GN=SLC30A2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.943e-11
Identity = 27/73 (36.99%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  204 NINLQGAYLHIMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEIN 422
            N +++ A++H++ D +QS GV++A  IL+ KP +  VD  CT +F+   L TT+ +L+ + ++LME TP  ++
Sbjct:  165 NPSVRAAFIHVIGDFMQSMGVLVAAYILYFKPEYKYVDPICTFVFSILVLGTTLTILRDVILVLMEGTPKGVD 237          
BLAST of CX296752 vs. ExPASy Swiss-Prot
Match: ZNT8_HUMAN (Zinc transporter 8 OS=Homo sapiens GN=SLC30A8 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 8.432e-11
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 3
Query:  189 KTKMLNINLQGAYLHIMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEIN 422
            K    N +++ A++H + DL QS  V+I+ LI++ KP + I D  CT IF+   L++T+ +LK   ++LME  P  +N
Sbjct:  206 KEVQANASVRAAFVHALGDLFQSISVLISALIIYFKPEYKIADPICTFIFSILVLASTITILKDFSILLMEGVPKSLN 283          
The following BLAST results are available for this feature:
BLAST of CX296752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
MTPB_ARATH6.426e-2753.85Metal tolerance protein B OS=Arabidopsis thaliana ... [more]
MTPA2_ARATH1.811e-2146.23Metal tolerance protein A2 OS=Arabidopsis thaliana... [more]
MTP1_ARATH8.988e-2155.70Metal tolerance protein 1 OS=Arabidopsis thaliana ... [more]
MTPA1_ARATH1.533e-2047.42Metal tolerance protein A1 OS=Arabidopsis thaliana... [more]
Y3629_DICDI4.320e-1542.53Probable zinc transporter protein DDB_G0283629 OS=... [more]
ZNT8_XENLA7.626e-1240.51Zinc transporter 8 OS=Xenopus laevis GN=slc30a8 PE... [more]
ZNT8_XENTR9.960e-1237.97Zinc transporter 8 OS=Xenopus tropicalis GN=slc30a... [more]
ZNT2_RAT2.219e-1136.99Zinc transporter 2 OS=Rattus norvegicus GN=Slc30a2... [more]
ZNT2_HUMAN4.943e-1136.99Zinc transporter 2 OS=Homo sapiens GN=SLC30A2 PE=2... [more]
ZNT8_HUMAN8.432e-1137.18Zinc transporter 8 OS=Homo sapiens GN=SLC30A8 PE=2... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05802D06SK FerrChloL1 Citrus clementina cDNA clone C05802D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296752 ID=CX296752; Name=CX296752; organism=Citrus clementina; type=EST; length=442bp
TTGGATTTCTCATCAACATAATCATGGTCACTTGTATCGGTCATGATCAT
GCTCATCATGCCTGTGGGCACAATCATCATATTGGTGGTCATGTTCATGG
TGATGACCATGGTCCTCATCACGAGGGAGAGAAATTATGTGCAGCTACTG
AAGAAAATCAGACTAATCTGGAGTCAAATTCTCCCATAAAGACCAAGATG
TTAAACATAAATCTCCAAGGGGCTTACCTACACATCATGGCTGATCTTAT
TCAATCTGCCGGGGTGATGATTGCAGGATTGATTTTGTGGGTAAAACCAG
GTTGGTCTATAGTGGATCTTAGCTGCACTCTTATTTTTGCTGCTTTTGCT
CTAAGTACTACTGTACCCATGCTTAAGACTATCTTTGTGATATTGATGGA
GAGGACGCCAAGTGAGATCAATGTTGCTAGACTGCAACGTGA
back to top