CX296754

Overview
NameCX296754
Unique NameCX296754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7459 contig Ccv1_Contig7459:189..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296754 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.977e-22
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = -3
Query:  232 KEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 453
            KE HPNNKSVA VGKA G+KWK ++  EKAPF+ +AEKRK +Y KN+Q YNK+ A G  AAEE ESDKS+SEVN
Sbjct:   55 KEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEEEESDKSRSEVN 126          
BLAST of CX296754 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.312e-19
Identity = 43/71 (60.56%), Postives = 56/71 (78.87%), Query Frame = -3
Query:  232 HPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 444
            HP NK+V+ VGKAAG KWK+MS+ EKAP+V ++EKRK +Y KNM+ YNK+ A+G    +E ES+KS SEVN
Sbjct:   66 HPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVN 136          
BLAST of CX296754 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.338e-18
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = -3
Query:  232 KEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 453
            K+ HPNNKSVA VGKA GE+WKS+SE+EKAP+V+RA K+K +Y   +Q YNK+L       +E  SDKSKSEVN
Sbjct:   64 KKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLE---GKDDEEGSDKSKSEVN 134          
BLAST of CX296754 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.222e-17
Identity = 45/85 (52.94%), Postives = 55/85 (64.71%), Query Frame = -3
Query:  232 KEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN-----------KQLADGVNAAEENESDKSKSEVN 453
            K+ +P NKSVA VGKAAGE+WKS+SE EKAP+V +A K K +YNK +  YN           K  A  V   +E ESDKSKSE+N
Sbjct:   61 KQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEVEEEDEEESDKSKSEIN 145          
BLAST of CX296754 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.392e-16
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = -3
Query:  232 KEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAA--------EENESDKSKSEVN 453
            KE +P NKSVA VGKAAG++WKS+SE +KAP+V +A K K +YNK +  YNK  +     A        +E ESDKSKSEVN
Sbjct:   60 KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVN 141          
The following BLAST results are available for this feature:
BLAST of CX296754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_IPONI4.977e-2267.57HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_SOYBN2.312e-1960.56HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_VICFA3.338e-1860.81HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
HMGL_WHEAT8.222e-1752.94HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
MNB1B_MAIZE2.392e-1653.66DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
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Properties
Property NameValue
Genbank descriptionC05802D08SK FerrChloL1 Citrus clementina cDNA clone C05802D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296754 ID=CX296754; Name=CX296754; organism=Citrus clementina; type=EST; length=491bp
CCGAATTCGGCACGAGGCTTTAATCATCCAGTTACATATCCATCCATATG
GTGCTTCAGTAAATCCTGAACAACACTTGATTTCTTTCCTAATCTAATCT
AAAAGGCTAAGGGTTATCATGTTATAAGCAATTCTACTAGATTGCTAAAA
CTTCAACATTTTTGAATCCTTCGCTGCCATTCTCTAGTCATCATCTTCCT
CCTCTCCACTGCCTTCTTCATCATCCTCATCATTCACTTCAGACTTGGAC
TTGTCAGATTCATTTTCCTCAGCAGCATTTACTCCATCAGCCAACTGCTT
GTTGTAATCCTGCATGTTCTTGTTGTAATCAGACTTTCTTTTCTCAGCCC
TTTCAACGAATGGCGCTTTCTCATCTTCTGACATTGACTTCCATTTTTCT
CCAGCAGCTTTGCCAACAGTAGCAACAGATTTATTGTTAGGATGAGCTTC
TTTGCCTCGTGCCGAATTCGGCACGAAGGGGGGGGCCCGGT
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