CX296757

Overview
NameCX296757
Unique NameCX296757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:648..1337. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 2.266e-102
Identity = 158/162 (97.53%), Postives = 161/162 (99.38%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  106 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 61.6178 bits (148), Expect = 2.266e-102
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFAKNRELEVIHCR   +G+
Sbjct:   80 GWDTAGLSADPETFAKNRELEVIHCRWAMLGA 111
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 2.266e-102
Identity = 156/162 (96.30%), Postives = 161/162 (99.38%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGA+EGYR+AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  106 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 61.6178 bits (148), Expect = 2.266e-102
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFAKNRELEVIHCR   +G+
Sbjct:   80 GWDTAGLSADPETFAKNRELEVIHCRWAMLGA 111
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 2.956e-102
Identity = 157/162 (96.91%), Postives = 161/162 (99.38%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  106 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 61.6178 bits (148), Expect = 2.956e-102
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFAKNRELEVIHCR   +G+
Sbjct:   80 GWDTAGLSADPETFAKNRELEVIHCRWAMLGA 111
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 3.856e-102
Identity = 157/162 (96.91%), Postives = 162/162 (100.00%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  113 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274

HSP 2 Score: 59.6918 bits (143), Expect = 3.856e-102
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPE FAKNRELEVIHCR   +G+
Sbjct:   87 GWDTAGLSADPENFAKNRELEVIHCRWAMLGA 118
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 3.857e-102
Identity = 156/162 (96.30%), Postives = 161/162 (99.38%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  104 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 61.6178 bits (148), Expect = 3.857e-102
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFAKNRELEVIHCR   +G+
Sbjct:   78 GWDTAGLSADPETFAKNRELEVIHCRWAMLGA 109
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 6.565e-102
Identity = 157/162 (96.91%), Postives = 161/162 (99.38%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  104 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 61.6178 bits (148), Expect = 6.565e-102
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFAKNRELEVIHCR   +G+
Sbjct:   78 GWDTAGLSADPETFAKNRELEVIHCRWAMLGA 109
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 6.565e-102
Identity = 156/162 (96.30%), Postives = 161/162 (99.38%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  105 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266

HSP 2 Score: 61.6178 bits (148), Expect = 6.565e-102
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFAKNRELEVIHCR   +G+
Sbjct:   79 GWDTAGLSADPETFAKNRELEVIHCRWAMLGA 110
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 1.117e-101
Identity = 156/162 (96.30%), Postives = 160/162 (98.77%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCVFPEL ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  105 WAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 61.6178 bits (148), Expect = 1.117e-101
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFAKNRELEVIHCR   +G+
Sbjct:   79 GWDTAGLSADPETFAKNRELEVIHCRWAMLGA 110
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 1.458e-101
Identity = 156/162 (96.30%), Postives = 160/162 (98.77%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  106 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267

HSP 2 Score: 61.6178 bits (148), Expect = 1.458e-101
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFAKNRELEVIHCR   +G+
Sbjct:   80 GWDTAGLSADPETFAKNRELEVIHCRWAMLGA 111
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 1.458e-101
Identity = 155/162 (95.68%), Postives = 160/162 (98.77%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCVFPEL ARNG+KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  106 WAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 61.6178 bits (148), Expect = 1.458e-101
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFAKNRELEVIHCR   +G+
Sbjct:   80 GWDTAGLSADPETFAKNRELEVIHCRWAMLGA 111
The following BLAST results are available for this feature:
BLAST of CX296757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB2G_SOLLC2.266e-10297.53Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB27_TOBAC2.266e-10296.30Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_TOBAC2.956e-10296.91Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB2B_PINSY3.856e-10296.91Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_TOBAC3.857e-10296.30Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2B_SOLLC6.565e-10296.91Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB21_TOBAC6.565e-10296.30Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB24_PETSP1.117e-10196.30Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB2A_SPIOL1.458e-10196.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_PETSP1.458e-10195.68Chlorophyll a-b binding protein 22R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionC05802D12SK FerrChloL1 Citrus clementina cDNA clone C05802D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296757 ID=CX296757; Name=CX296757; organism=Citrus clementina; type=EST; length=691bp
ACGAGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCA
AGAACCGTGAACTCGAAGTCATCCACTGCAGGATGGGCCATGTTGGGAGC
TCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCG
GTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGG
CTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGC
CATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAA
TTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGC
AGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCT
CAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTG
GTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTG
GCCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCAC
CAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTT
TCGGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTA
ATTTGAGTTGTGATTATTTATAAAATGCTTTCATTTGATCT
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