CX296772

Overview
NameCX296772
Unique NameCX296772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length214
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig711 contig Ccv1_Contig711:1..214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296772 vs. ExPASy Swiss-Prot
Match: RFS_ORYSJ (Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.118e-17
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 3
Query:   24 LTPSTATATEKSV-FSNVGSFIGFDSFEPKSRHVVPIGKLKNIRFMSIFRFKVWWTTHWVGSNG 212
            LTP++       V  +  GSF+GFD+   K RHVVPIGKL++ RFMSIFRFKVWWTTHWVG+NG
Sbjct:   52 LTPASTLVPNSDVPAAAAGSFLGFDAPAAKDRHVVPIGKLRDTRFMSIFRFKVWWTTHWVGTNG 115          
BLAST of CX296772 vs. ExPASy Swiss-Prot
Match: RFS5_ARATH (Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.072e-17
Identity = 46/67 (68.66%), Postives = 49/67 (73.13%), Query Frame = 3
Query:   21 TLTPSTATATEKSVFSNV--GSFIGFD-SFEPKSRHVVPIGKLKNIRFMSIFRFKVWWTTHWVGSNG 212
            TLT S     +  V  +V  GSFIGF+   EPKS HV  IGKLKNIRFMSIFRFKVWWTTHWVGSNG
Sbjct:   45 TLTSSPYLVDKDGVPLDVSAGSFIGFNLDGEPKSHHVASIGKLKNIRFMSIFRFKVWWTTHWVGSNG 111          
BLAST of CX296772 vs. ExPASy Swiss-Prot
Match: RFS_PEA (Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.639e-16
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   45 ATEKSVFSNVGSFIGFDSFEPKSRHVVPIGKLKNIRFMSIFRFKVWWTTHWVGSNG 212
            A   +     G F+GF++ E KS HVVP+GKLK I+F SIFRFKVWWTTHWVG+NG
Sbjct:   74 ANNNNTLQQQGCFVGFNTTEAKSHHVVPLGKLKGIKFTSIFRFKVWWTTHWVGTNG 129          
The following BLAST results are available for this feature:
BLAST of CX296772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RFS_ORYSJ3.118e-1762.50Galactinol--sucrose galactosyltransferase OS=Oryza... [more]
RFS5_ARATH4.072e-1768.66Probable galactinol--sucrose galactosyltransferase... [more]
RFS_PEA2.639e-1662.50Galactinol--sucrose galactosyltransferase OS=Pisum... [more]
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Properties
Property NameValue
Genbank descriptionC05802F06SK FerrChloL1 Citrus clementina cDNA clone C05802F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296772 ID=CX296772; Name=CX296772; organism=Citrus clementina; type=EST; length=214bp
TGCCGAATTCGGCACGAGGCACTCTCACTCCCTCCACAGCCACCGCCACC
GAAAAATCAGTATTCTCCAACGTCGGATCTTTCATCGGGTTCGACTCTTT
CGAACCCAAAAGCCGCCACGTGGTGCCCATAGGGAAGCTGAAGAACATCC
GGTTCATGAGCATATTCCGGTTCAAGGTCTGGTGGACCACCCACTGGGTC
GGTTCAAACGGCCG
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