CX296773
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 347.051 bits (889), Expect = 5.866e-95 Identity = 168/239 (70.29%), Postives = 194/239 (81.17%), Query Frame = 1 Query: 7 FGTRIHGPVVKQRSGKFQARXXXXXXXXXXXXXXXPTR----DSDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLE-IFIG*NQHARLA 708 FG RI P + +G+ QAR +R D DRLVWFPGA PPEWLDG+M+GDRGFDP GLGKP EYLQYDFD LDQNLAKN G+++G+I +S E++PTP QPYTEVFG+QRFRECELIHGRWAMLGTLGAIAVEALTG+AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEV+V+GYIE+QRN+ELDP KR+YPGGYFDPLGLA+DP KL+ + + +H+RLA Sbjct: 13 FGIRIQDP--RPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLA 249
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 301.597 bits (771), Expect = 2.826e-81 Identity = 149/235 (63.40%), Postives = 181/235 (77.02%), Query Frame = 1 Query: 10 GTRIHGPVVKQRSGKFQARXXXXXXXXXXXXXXXPTRDSDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGK-LEIFIG*NQHARLA 708 GTR+ P + SG+F A T +DR +W+PGA P+WLDG++VGD GFDP GLGKP EYLQ+D DSLDQNLAKN G+++G T++ + + TP QPY+EVFG+QRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TLIWIEV+VIGYIE+QRNAELD KRLYPGG +FDPLGLA+DP K ++ + +HARLA Sbjct: 16 GTRV-APGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLA 249
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 297.745 bits (761), Expect = 4.081e-80 Identity = 146/197 (74.11%), Postives = 168/197 (85.28%), Query Frame = 1 Query: 124 SDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDP-GKLEIFIG*NQHARLA 708 SDR +WFPGA PE+LDG++VGD GFDP GLGKP EYLQ+D DSLDQNLAKN GE++G T++ + + TP QPY+EVFGLQRFRECELIHGRWAML TLGAI VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TLIWIEV+VIGYIE+QRNAELD KRLYPGG +FDPLGLASDP K ++ + +HARLA Sbjct: 50 SDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLA 246
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 215.698 bits (548), Expect = 2.040e-55 Identity = 110/200 (55.00%), Postives = 137/200 (68.50%), Query Frame = 1 Query: 136 VWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVI--TDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGK--LEIFIG*NQHARLAW*HFY 723 +W P T PEWLDG++ GDRGFDPLGL KP+E++ D DQN AKN+ G + ++ T L PY+EVFGL RFRECELIHGRWAML LGA+ EA TGV+W +AGKVEL +G+SY G LPFS+T LIWIEVI++G E+ RN+E +P KR YPGG FDPL LAS+ + + +HARLA F+ Sbjct: 52 LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFF 250
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23 Identity = 66/181 (36.46%), Postives = 88/181 (48.62%), Query Frame = 1 Query: 139 WFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLE 672 W PG P +LDG+ GD GFD LGLG+ L+R++E ELIH RWAML G I EAL W A + + G ++YLGQP+P+ +L T++ IE + I ++E+QR+ E D K+ YPGG FDPLG + DP K E Sbjct: 49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPA-------------------------------------------NLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFE 186
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.517e-21 Identity = 66/181 (36.46%), Postives = 84/181 (46.41%), Query Frame = 1 Query: 139 WFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGK-VELVEG-SSYLGQPLPF-SLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLE 672 WFPG P LDG+ GD GFDPLGL E +RF+E E+ H RWAML G + EAL W A + L +G ++YLG P+P+ +L T++ IE + I + E QR E DP K+ YPGG FDPLG + DP K E Sbjct: 48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPE-------------------------------------------NFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFE 185
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.430e-16 Identity = 68/217 (31.34%), Postives = 93/217 (42.86%), Query Frame = 1 Query: 160 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRL----------------------YPGG-YFDPLGLAS---------DPGKLE-IFIG*NQHARLA 708 PEWLDG++ GD GFDPLGLGK +L++ +RE ELIHGRWAML LG +A TG+ W +AG + G PFS TL+ +++++G++E +R + DP + YPGG +FDPL LA D KLE + + +HARLA Sbjct: 73 PEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLA 238
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15 Identity = 61/178 (34.27%), Postives = 81/178 (45.51%), Query Frame = 1 Query: 160 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--------GVAWQDAGKVELVEGS--SYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDP 660 PE+L+G + GD G+DP GLGK E N AK ++ ELIH RWAMLG G I EAL W G + L++G+ +Y G+ +P +L + EV+++G EY R LD +L+PGG FDPLGLA DP Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPE-----------NFAK--------------------------------YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDP 215
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.520e-15 Identity = 67/217 (30.88%), Postives = 92/217 (42.40%), Query Frame = 1 Query: 160 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRL----------------------YPGG-YFDPLGLAS---------DPGKLE-IFIG*NQHARLA 708 PEWLDG++ GD GFDPLGLGK +L++ +RE ELIHGRWAM LG +A +G+ W +AG + G PFS TL+ ++I++G++E +R + DP + YPGG +FDPL LA D KLE + + +HARLA Sbjct: 68 PEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLA 233
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13 Identity = 63/217 (29.03%), Postives = 91/217 (41.94%), Query Frame = 1 Query: 160 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQR-----------------------NAELDPVKRLYPGG-YFDPLGLAS---------DPGKLE-IFIG*NQHARLA 708 PEWLDG++ GD GFDPLGLGK +L++ +RE ELIHGRWAM LG +A +G+ W +AG + G PFS +L+ +++++G++E +R N ++ YPGG +FDPL LA D KLE + + +H+RLA Sbjct: 68 PEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLA 233 The following BLAST results are available for this feature:
BLAST of CX296773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296773 ID=CX296773; Name=CX296773; organism=Citrus clementina; type=EST; length=726bpback to top |