CX296773

Overview
NameCX296773
Unique NameCX296773
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13572 contig Ccv1_Contig13572:142..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 5.866e-95
Identity = 168/239 (70.29%), Postives = 194/239 (81.17%), Query Frame = 1
Query:    7 FGTRIHGPVVKQRSGKFQARXXXXXXXXXXXXXXXPTR----DSDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLE-IFIG*NQHARLA 708
            FG RI  P  +  +G+ QAR                +R    D DRLVWFPGA PPEWLDG+M+GDRGFDP GLGKP EYLQYDFD LDQNLAKN  G+++G+I +S E++PTP QPYTEVFG+QRFRECELIHGRWAMLGTLGAIAVEALTG+AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEV+V+GYIE+QRN+ELDP KR+YPGGYFDPLGLA+DP KL+ + +   +H+RLA
Sbjct:   13 FGIRIQDP--RPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLA 249          
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 2.826e-81
Identity = 149/235 (63.40%), Postives = 181/235 (77.02%), Query Frame = 1
Query:   10 GTRIHGPVVKQRSGKFQARXXXXXXXXXXXXXXXPTRDSDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGK-LEIFIG*NQHARLA 708
            GTR+  P +   SG+F A                 T  +DR +W+PGA  P+WLDG++VGD GFDP GLGKP EYLQ+D DSLDQNLAKN  G+++G  T++ + + TP QPY+EVFG+QRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TLIWIEV+VIGYIE+QRNAELD  KRLYPGG +FDPLGLA+DP K  ++ +   +HARLA
Sbjct:   16 GTRV-APGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLA 249          
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 4.081e-80
Identity = 146/197 (74.11%), Postives = 168/197 (85.28%), Query Frame = 1
Query:  124 SDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDP-GKLEIFIG*NQHARLA 708
            SDR +WFPGA  PE+LDG++VGD GFDP GLGKP EYLQ+D DSLDQNLAKN  GE++G  T++ + + TP QPY+EVFGLQRFRECELIHGRWAML TLGAI VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TLIWIEV+VIGYIE+QRNAELD  KRLYPGG +FDPLGLASDP  K ++ +   +HARLA
Sbjct:   50 SDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLA 246          
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 215.698 bits (548), Expect = 2.040e-55
Identity = 110/200 (55.00%), Postives = 137/200 (68.50%), Query Frame = 1
Query:  136 VWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVI--TDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGK--LEIFIG*NQHARLAW*HFY 723
            +W P  T PEWLDG++ GDRGFDPLGL KP+E++    D  DQN AKN+ G +  ++  T         L PY+EVFGL RFRECELIHGRWAML  LGA+  EA TGV+W +AGKVEL +G+SY G  LPFS+T LIWIEVI++G  E+ RN+E +P KR YPGG FDPL LAS+  +    +     +HARLA   F+
Sbjct:   52 LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFF 250          
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 66/181 (36.46%), Postives = 88/181 (48.62%), Query Frame = 1
Query:  139 WFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLE 672
            W PG   P +LDG+  GD GFD LGLG+                                               L+R++E ELIH RWAML   G I  EAL    W  A +   + G  ++YLGQP+P+ +L T++ IE + I ++E+QR+ E D  K+ YPGG FDPLG + DP K E
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPA-------------------------------------------NLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFE 186          
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.517e-21
Identity = 66/181 (36.46%), Postives = 84/181 (46.41%), Query Frame = 1
Query:  139 WFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGK-VELVEG-SSYLGQPLPF-SLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLE 672
            WFPG   P  LDG+  GD GFDPLGL    E                                             +RF+E E+ H RWAML   G +  EAL    W  A +   L +G ++YLG P+P+ +L T++ IE + I + E QR  E DP K+ YPGG FDPLG + DP K E
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPE-------------------------------------------NFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFE 185          
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.430e-16
Identity = 68/217 (31.34%), Postives = 93/217 (42.86%), Query Frame = 1
Query:  160 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRL----------------------YPGG-YFDPLGLAS---------DPGKLE-IFIG*NQHARLA 708
            PEWLDG++ GD GFDPLGLGK   +L++                                           +RE ELIHGRWAML  LG    +A TG+ W +AG        +  G   PFS  TL+  +++++G++E +R  +  DP  +                       YPGG +FDPL LA          D  KLE + +   +HARLA
Sbjct:   73 PEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLA 238          
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 61/178 (34.27%), Postives = 81/178 (45.51%), Query Frame = 1
Query:  160 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--------GVAWQDAGKVELVEGS--SYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDP 660
            PE+L+G + GD G+DP GLGK  E           N AK                                ++  ELIH RWAMLG  G I  EAL            W   G + L++G+  +Y G+ +P +L   +  EV+++G  EY R    LD   +L+PGG FDPLGLA DP
Sbjct:   82 PEYLNGEVAGDYGYDPFGLGKKPE-----------NFAK--------------------------------YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDP 215          
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.520e-15
Identity = 67/217 (30.88%), Postives = 92/217 (42.40%), Query Frame = 1
Query:  160 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRL----------------------YPGG-YFDPLGLAS---------DPGKLE-IFIG*NQHARLA 708
            PEWLDG++ GD GFDPLGLGK   +L++                                           +RE ELIHGRWAM   LG    +A +G+ W +AG        +  G   PFS  TL+  ++I++G++E +R  +  DP  +                       YPGG +FDPL LA          D  KLE + +   +HARLA
Sbjct:   68 PEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLA 233          
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 63/217 (29.03%), Postives = 91/217 (41.94%), Query Frame = 1
Query:  160 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQR-----------------------NAELDPVKRLYPGG-YFDPLGLAS---------DPGKLE-IFIG*NQHARLA 708
            PEWLDG++ GD GFDPLGLGK   +L++                                           +RE ELIHGRWAM   LG    +A +G+ W +AG        +  G   PFS  +L+  +++++G++E +R                       N      ++ YPGG +FDPL LA          D  KLE + +   +H+RLA
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLA 233          
The following BLAST results are available for this feature:
BLAST of CX296773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CB4C_ARATH5.866e-9570.29Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB4A_ARATH2.826e-8163.40Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH4.081e-8074.11Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB29_CHLRE2.040e-5555.00Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB11_SOLLC5.990e-2336.46Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU2.517e-2136.46Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB4_SPIOL5.430e-1631.34Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB26_ARATH1.210e-1534.27Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB4A_SOLLC3.520e-1530.88Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC2.523e-1329.03Chlorophyll a-b binding protein CP24 10B, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC05802F07SK FerrChloL1 Citrus clementina cDNA clone C05802F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296773 ID=CX296773; Name=CX296773; organism=Citrus clementina; type=EST; length=726bp
CATTTCTTCGGGACGAGAATTCATGGTCCTGTCGTGAAACAAAGATCGGG
AAAATTCCAAGCCAGGTTCAGCTTTCGCAAGAAAAAATCCCCACCAGCCA
AAAAGGCCAGGCCTACACGAGACTCCGACCGGCTTGTCTGGTTCCCCGGC
GCCACCCCGCCGGAATGGCTCGACGGGACAATGGTGGGTGACCGTGGGTT
CGACCCGTTGGGGCTGGGGAAGCCAACAGAGTACTTGCAGTATGATTTTG
ACTCGTTGGATCAGAACTTGGCCAAGAACGATGTCGGCGAGCTTCTCGGA
GTGATTACTGATTCCGGGGAGCTGCAGCCGACGCCGCTGCAGCCGTACAC
GGAGGTATTTGGGCTGCAGAGGTTTAGAGAATGTGAGCTGATTCATGGAA
GGTGGGCCATGTTGGGTACCCTTGGCGCCATTGCTGTTGAAGCTCTCACT
GGTGTCGCATGGCAGGATGCTGGAAAGGTGGAGCTGGTGGAGGGTTCATC
TTATCTTGGCCAACCACTTCCATTTTCATTAACAACATTGATTTGGATTG
AAGTTATTGTGATTGGGTACATAGAATATCAAAGAAATGCAGAGCTTGAT
CCAGTGAAAAGACTATACCCTGGTGGGTATTTTGATCCTCTTGGCTTGGC
CTCAGATCCTGGGAAGCTTGAAATCTTCATTGGCTGAAATCAGCACGCTC
GTCTAGCATGGTAGCATTTTTATCTT
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