CX296780

Overview
NameCX296780
Unique NameCX296780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig834 contig Ccv1_Contig834:10..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 1.572e-37
Identity = 72/86 (83.72%), Postives = 76/86 (88.37%), Query Frame = 3
Query:   48 MVLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 305
            MVLQNDIDLLNPPA          RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ++LCQPTGG+A+LTEGCSFRRKGD
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 2.270e-36
Identity = 72/86 (83.72%), Postives = 74/86 (86.05%), Query Frame = 3
Query:   48 MVLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 305
            MVLQNDIDLLNPPA          RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQ+VLCQPTGG+ARLTEGCSFRRKGD
Sbjct:    1 MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRKGD 86          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.627e-34
Identity = 67/84 (79.76%), Postives = 73/84 (86.90%), Query Frame = 3
Query:   48 MVLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            MVLQNDIDLLNPPA          RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQ++LC PTGG+A+LTEGCSFR+K
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.125e-34
Identity = 68/84 (80.95%), Postives = 72/84 (85.71%), Query Frame = 3
Query:   48 MVLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            MVLQNDIDLL+PP           RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ+VLCQPTGG+ARL EGCSFR+K
Sbjct:    1 MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.598e-32
Identity = 66/86 (76.74%), Postives = 69/86 (80.23%), Query Frame = 3
Query:   48 MVLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 305
            MVL +DIDLLNPPA          RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C SVLC PTG   RLTEGCSFRRK D
Sbjct:    1 MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGSCSSVLCTPTGWPRRLTEGCSFRRKSD 86          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27_SCHPO (40S ribosomal protein S27 OS=Schizosaccharomyces pombe GN=rps27 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.605e-27
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = 3
Query:   66 IDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            +DLLNP            +LVQ P SFFMDVKC GCFNITTVFSH+QTVV+CG+C SVLCQPTGG+ARL EGCSFRRK
Sbjct:    5 VDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27_XENLA (40S ribosomal protein S27 OS=Xenopus laevis GN=rps27 PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.803e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 3
Query:   69 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPTPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27_RAT (40S ribosomal protein S27 OS=Rattus norvegicus GN=Rps27 PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.803e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 3
Query:   69 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27_MOUSE (40S ribosomal protein S27 OS=Mus musculus GN=Rps27 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.803e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 3
Query:   69 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27_HUMAN (40S ribosomal protein S27 OS=Homo sapiens GN=RPS27 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.803e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 3
Query:   69 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
The following BLAST results are available for this feature:
BLAST of CX296780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS272_ARATH1.572e-3783.7240S ribosomal protein S27-2 OS=Arabidopsis thalian... [more]
RS27_HORVU2.270e-3683.7240S ribosomal protein S27 OS=Hordeum vulgare GN=RP... [more]
RS271_ARATH1.627e-3479.7640S ribosomal protein S27-1 OS=Arabidopsis thalian... [more]
RS273_ARATH2.125e-3480.9540S ribosomal protein S27-3 OS=Arabidopsis thalian... [more]
RS27_CHLRE2.598e-3276.7440S ribosomal protein S27 OS=Chlamydomonas reinhar... [more]
RS27_SCHPO5.605e-2770.5140S ribosomal protein S27 OS=Schizosaccharomyces p... [more]
RS27_XENLA1.803e-2568.8340S ribosomal protein S27 OS=Xenopus laevis GN=rps... [more]
RS27_RAT1.803e-2568.8340S ribosomal protein S27 OS=Rattus norvegicus GN=... [more]
RS27_MOUSE1.803e-2568.8340S ribosomal protein S27 OS=Mus musculus GN=Rps27... [more]
RS27_HUMAN1.803e-2568.8340S ribosomal protein S27 OS=Homo sapiens GN=RPS27... [more]

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Properties
Property NameValue
Genbank descriptionC05802G04SK FerrChloL1 Citrus clementina cDNA clone C05802G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296780 ID=CX296780; Name=CX296780; organism=Citrus clementina; type=EST; length=506bp
TCTAGGGTTTCCTCCTGAATCTCGTCTGGCAATAGCAATTAGCAAGCATG
GTTCTCCAAAACGATATTGATTTGTTGAATCCTCCTGCTGAGCTTGAGAA
GAAGAAGCACAAGCTTAAGCGGCTTGTTCAATCCCCCAATTCCTTTTTCA
TGGATGTGAAATGTCAGGGTTGTTTCAACATAACAACTGTTTTCAGCCAC
TCTCAAACTGTTGTGGTTTGTGGCAACTGCCAATCCGTTCTGTGCCAGCC
CACTGGTGGTCGTGCCAGACTCACTGAGGGATGCTCGTTCAGAAGAAAGG
GTGACTAAGTGTTGCCTAAATGATAGATCTTTTCATTTTGGTTATGATGT
ATTAATTTTGGTAGAAGTTTTAAGGTTAGACAGTGTTTTAACCTTTTGTT
TCAAATTTAATTTACTCGATGTAGTGGATGATCTTATGTTTGGAAGAAAA
TATTTTTAAGTGAATGTTTTCCTCGTGCCGAATTCGGCACGAAGGGGGGG
CCCGGT
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