CX296786

Overview
NameCX296786
Unique NameCX296786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296786_ssr447 microsatellite CX296786_ssr447:447..458. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6281 contig Ccv1_Contig6281:61..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCA_ORYSJ (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 6.349e-86
Identity = 158/189 (83.60%), Postives = 168/189 (88.89%), Query Frame = 1
Query:  151 LSSSAAPAAHSRNYGSSAAAS-HPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            L S+A+   H+R + ++AAA+  PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF            LDLVVCITEGIPQHDMV+VKAALN+QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT
Sbjct:   12 LGSAASRLLHARGFAAAAAAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 200          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCA1_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 5.030e-83
Identity = 164/220 (74.55%), Postives = 176/220 (80.00%), Query Frame = 1
Query:   67 MARQALAKLIGSIGS--RRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHP--AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            M+RQ +A+LIGS+ S  RR ST  S   +    S      SR++ S     HP  AVFVDKNTRV+CQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFNSVAEAKA+TKANASVIYVP PF            LDL+VCITEGIPQHDMVRVK ALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG++GIVSRSGTLTYEAVFQT
Sbjct:    1 MSRQ-VARLIGSLSSKARRCSTGGS-EVFPSCQSLTSLTQSRSFASDP---HPPAAVFVDKNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNSVAEAKADTKANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMVRVKHALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQT 215          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCA2_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 1.239e-81
Identity = 158/216 (73.15%), Postives = 173/216 (80.09%), Query Frame = 1
Query:   67 MARQALAKLIGSIGSRRPSTASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            M+RQ + +L+GS+       + S     L+S       SR++G++      AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFN+VAEAKAETKANASVIYVP PF            LDL+VCITEGIPQHDMVRVKAALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG++GIVSRSGTLTYEAVFQT
Sbjct:    1 MSRQ-VTRLLGSLRHSGGGCSGSSKVCSLTS----LVQSRSFGTTPPPP-AAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMVRVKAALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQT 210          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCA_RAT (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Suclg1 PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 123/172 (71.51%), Postives = 137/172 (79.65%), Query Frame = 1
Query:  199 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            S  AS   +++DKNT+VICQG TGK GTFH++QA+EYGTK+VGG TP KGG +HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ KTRLIGPNCPGII PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QT
Sbjct:   42 SYTASRKNIYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKKHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHKLTRQGKTRLIGPNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQT 213          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCA_DICDI (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=scsA PE=1 SV=3)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 121/178 (67.98%), Postives = 144/178 (80.90%), Query Frame = 1
Query:  181 SRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            +RN+G    ++ P+V ++K+T+VICQG TG  GTFH++QAIEYGT MVGGV+P KGG +HL LPVFN+V EAK  T ANA+VIYVPPP             ++LVVCITEGIPQ DMV+VK  LN+Q+KTRLIGPNCPGIIKPGECKIGIMPG+IHKPG++GIVSRSGTLTYEAV QT
Sbjct:    8 ARNFGKRFFSTKPSVLINKHTKVICQGFTGNQGTFHSKQAIEYGTNMVGGVSPGKGGQKHLDLPVFNTVKEAKEATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMVKVKYLLNKQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKPGKIGIVSRSGTLTYEAVAQT 185          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCA_MOUSE (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Mus musculus GN=Suclg1 PE=1 SV=4)

HSP 1 Score: 253.062 bits (645), Expect = 1.126e-66
Identity = 125/198 (63.13%), Postives = 146/198 (73.74%), Query Frame = 1
Query:  121 STASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            S++S ++  RL S       +     S  AS   +++DKNT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG +HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ  TRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QT
Sbjct:   16 SSSSGLAAARLLSRTFLLQQNGIRHGSYTASRKHIYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQKHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHRLTRQGTTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQT 213          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCA_HUMAN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Homo sapiens GN=SUCLG1 PE=1 SV=4)

HSP 1 Score: 252.292 bits (643), Expect = 1.920e-66
Identity = 122/172 (70.93%), Postives = 136/172 (79.07%), Query Frame = 1
Query:  199 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            S  AS   ++VDKNT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG  HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ KTRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QT
Sbjct:   42 SYTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMVRVKHKLLRQEKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQT 213          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCA_BOVIN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Bos taurus GN=SUCLG1 PE=2 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 5.588e-66
Identity = 126/198 (63.64%), Postives = 145/198 (73.23%), Query Frame = 1
Query:  121 STASSVSHYRLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            S +S ++  RL S A     +     S   S   ++VD+NT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG  HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ KTRL+GPNCPG+I PGECKIGIMPG+IHK GRVGIVSRSGTLTYEAV QT
Sbjct:   16 SGSSGLAAARLLSRAFLLQQNGIRHCSYTTSRKHLYVDRNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAVAAIDEAIEAEVSLVVCITEGIPQQDMVRVKHKLLRQGKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRVGIVSRSGTLTYEAVHQT 213          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCA_PIG (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Sus scrofa GN=SUCLG1 PE=1 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 7.298e-66
Identity = 122/172 (70.93%), Postives = 135/172 (78.49%), Query Frame = 1
Query:  199 SAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            S  AS   ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG  HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ KTRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QT
Sbjct:   42 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQT 213          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCA_DROME (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=Scsalpha PE=2 SV=3)

HSP 1 Score: 233.417 bits (594), Expect = 9.232e-61
Identity = 109/159 (68.55%), Postives = 131/159 (82.39%), Query Frame = 1
Query:  238 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            ++RVICQG TGK GTFH++QA+EYGTK+VGG++PKKGGT+HLGLPVF SVAEAK  T  +A+VIYVPPP             + L+VCITEG+PQHDMV+VK AL  QSK+RL+GPNCPGII P +CKIGIMPG+IHK G++G+VSRSGTLTYEAV QT
Sbjct:   37 DSRVICQGFTGKQGTFHSQQALEYGTKLVGGISPKKGGTQHLGLPVFASVAEAKKATDPHATVIYVPPPGAAAAIIEALEAEIPLIVCITEGVPQHDMVKVKHALISQSKSRLVGPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLTYEAVHQT 195          
The following BLAST results are available for this feature:
BLAST of CX296786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCA_ORYSJ6.349e-8683.60Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCA1_ARATH5.030e-8374.55Succinyl-CoA ligase [GDP-forming] subunit alpha-1,... [more]
SUCA2_ARATH1.239e-8173.15Succinyl-CoA ligase [GDP-forming] subunit alpha-2,... [more]
SUCA_RAT2.963e-6771.51Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_DICDI2.963e-6767.98Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_MOUSE1.126e-6663.13Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_HUMAN1.920e-6670.93Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_BOVIN5.588e-6663.64Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_PIG7.298e-6670.93Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_DROME9.232e-6168.55Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]

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Properties
Property NameValue
Genbank descriptionC05802G10SK FerrChloL1 Citrus clementina cDNA clone C05802G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296786 ID=CX296786; Name=CX296786; organism=Citrus clementina; type=EST; length=718bp
TGCCGAATTCGGCACGAGGCGGCACGAGGGAAAATCAGCGAATCAGATTA
AAGTGAAGTGAATCAAATGGCTCGCCAAGCCTTGGCCAAGCTGATCGGCT
CGATCGGATCTCGCAGACCGTCTACTGCTTCTTCCGTTTCACATTACAGA
TTATCATCGTCGGCGGCGCCGGCGGCCCACTCTCGAAATTATGGGTCGTC
GGCGGCGGCGTCTCATCCGGCAGTTTTCGTCGACAAAAACACTCGAGTTA
TATGCCAAGGCATCACCGGAAAAAACGGCACGTTCCACACCGAACAAGCC
ATCGAATACGGCACCAAAATGGTGGGTGGCGTGACGCCGAAGAAGGGTGG
GACTGAGCACTTGGGACTTCCTGTATTCAACTCGGTTGCTGAAGCTAAGG
CTGAAACGAAGGCTAATGCTTCTGTCATTTATGTTCCTCCGCCATTTGCT
GCTGCTGCTATCATGGAGGCTATGGAGGCTGAGTTGGATCTTGTCGTCTG
TATCACCGAAGGAATCCCTCAACATGATATGGTGCGAGTGAAAGCTGCTC
TAAACAGGCAATCTAAAACTCGGCTGATTGGTCCCAACTGCCCTGGTATC
ATCAAACCTGGAGAATGTAAGATTGGCATTATGCCTGGGTATATTCACAA
ACCTGGGCGGGTTGGAATTGTTTCTCGATCTGGTACCTTGACCTACGAAG
CAGTTTTTCAAACACTGT
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