CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12471 contig Ccv1_Contig12471:803..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH5_ARATH (Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial OS=Arabidopsis thaliana GN=IDH5 PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.551e-79
Identity = 143/165 (86.67%), Postives = 156/165 (94.55%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            IHKANIMQKTDGLF   CREVAEKYPEITYEEVVIDNCCMMLVKNPA FDVLVMPNLYGDIISDLCAGL+GGLGLTPSCNIGE G+ALAEAVHGSAPDIAGKNLANPTALLLS V MLRHL+ +++A++I +AI++TIAEGKYRTADLGGSSTT++FTKAICDHL
Sbjct:  210 IHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLVGGLGLTPSCNIGEDGVALAEAVHGSAPDIAGKNLANPTALLLSGVMMLRHLKFNEQAEQIHSAIINTIAEGKYRTADLGGSSTTTEFTKAICDHL 374          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH6_ARATH (Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial OS=Arabidopsis thaliana GN=IDH6 PE=1 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.359e-75
Identity = 140/165 (84.85%), Postives = 151/165 (91.52%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            IHKANIMQKTDGLF   C EVA KYPEI YE+VVIDNCCMMLVKNPA FDVLVMPNLYGDIISDLCAGL+GGLGLTPS NIGE GIALAEAVHGSAPDIAG NLANPTALLLS V MLRHL+L+ +A++I +AI++TIAEGKYRTADLGGSSTT+DFTKAICDHL
Sbjct:  210 IHKANIMQKTDGLFLQCCDEVAAKYPEIYYEKVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLVGGLGLTPSMNIGEDGIALAEAVHGSAPDIAGMNLANPTALLLSGVMMLRHLKLNKQAEQIHSAIINTIAEGKYRTADLGGSSTTTDFTKAICDHL 374          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_SOLTU (3-isopropylmalate dehydrogenase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.008e-70
Identity = 133/142 (93.66%), Postives = 135/142 (95.07%), Query Frame = -2
Query:  303 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGK 728
            IHKANIMQKTDGLF   CREVAEKYPEI YEEVVIDNCCMMLVKNPA FDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSV+MLRHLELHDKADRIQ+AIL TIA GK
Sbjct:  203 IHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVSMLRHLELHDKADRIQDAILKTIAGGK 344          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDHA_DICDI (Isocitrate dehydrogenase [NAD] regulatory subunit A, mitochondrial OS=Dictyostelium discoideum GN=idhA PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 7.011e-56
Identity = 105/158 (66.46%), Postives = 129/158 (81.65%), Query Frame = -2
Query:  255 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFT 728
            IHKANIM+++DGLF   CREV+ +YP I YEE+ IDN CM LV +P   DV+V+PNLYGDI+SDLCAGLIGGLGLTPS NIGE G A+ EAVHG+APDIAGKN ANPTAL+LSS+ MLRHL    +A  I+NA+L+T+ EGK +T DLGG+S+ S++T
Sbjct:  184 IHKANIMKQSDGLFVKSCREVSTRYPSIKYEELTIDNNCMQLVLDPNQMDVMVLPNLYGDIVSDLCAGLIGGLGLTPSGNIGENGSAIFEAVHGTAPDIAGKNKANPTALILSSIMMLRHLGHFHEASIIENAVLNTLTEGKVKTGDLGGNSSCSEYT 341          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3A_DROME (Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=l(1)G0156 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.024e-54
Identity = 103/165 (62.42%), Postives = 130/165 (78.79%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKANIM+ +DGLF    R++A+K+PEI +EE  +D  C+ +V+NP  +DVLVMPNLYGDI+SD+CAGL+GGLGLTPS N+G  G AL E+VHG+APDIAGK+LANPTALLLS+V MLRH+EL+  AD+I+ A   TI EGKY T DLGG +  S+FT  IC  L
Sbjct:  214 VHKANIMRMSDGLFLRCVRDMAQKFPEIQFEEKYLDTVCLNMVQNPGKYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNMGLNG-ALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHMELNTYADKIERAAFETIKEGKYLTGDLGGRAKCSEFTNEICAKL 377          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3A_BOVIN (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Bos taurus GN=IDH3A PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.562e-54
Identity = 101/162 (62.35%), Postives = 129/162 (79.63%), Query Frame = -2
Query:  243 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAIC 728
            +HKANIM+ +DGLF   CREVAE   +I + E+ +D  C+ +V++P+ FDVLVMPNLYGDI+SDLCAGLIGGLG+TPS NIG  G+A+ E+VHG+APDIAGK++ANPTALLLS+V MLRH+ L D A +I+ A  +TI +GK  T DLGG+S  SDFT+ IC
Sbjct:  198 VHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGANGVAIFESVHGTAPDIAGKDMANPTALLLSAVMMLRHMGLFDHAAKIETACFATIKDGKSLTKDLGGNSKCSDFTEEIC 359          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3A_PONAB (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Pongo abelii GN=IDH3A PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.119e-53
Identity = 101/162 (62.35%), Postives = 129/162 (79.63%), Query Frame = -2
Query:  243 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAIC 728
            +HKANIM+ +DGLF   CREVAE   +I + E+ +D  C+ +V++P+ FDVLVMPNLYGDI+SDLCAGLIGGLG+TPS NIG  G+A+ E+VHG+APDIAGK++ANPTALLLS+V MLRH+ L D A RI+ A  +TI +GK  T DLGG++  SDFT+ IC
Sbjct:  198 VHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGANGVAIFESVHGTAPDIAGKDMANPTALLLSAVMMLRHMGLFDHAARIEAACFATIKDGKSLTKDLGGNAKCSDFTEEIC 359          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3A_MACFA (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial (Fragment) OS=Macaca fascicularis GN=IDH3A PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.119e-53
Identity = 101/162 (62.35%), Postives = 129/162 (79.63%), Query Frame = -2
Query:  243 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAIC 728
            +HKANIM+ +DGLF   CREVAE   +I + E+ +D  C+ +V++P+ FDVLVMPNLYGDI+SDLCAGLIGGLG+TPS NIG  G+A+ E+VHG+APDIAGK++ANPTALLLS+V MLRH+ L D A RI+ A  +TI +GK  T DLGG++  SDFT+ IC
Sbjct:  179 VHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGANGVAIFESVHGTAPDIAGKDMANPTALLLSAVMMLRHMGLFDHAARIEAACFATIKDGKSLTKDLGGNAKCSDFTEEIC 340          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3A_HUMAN (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Homo sapiens GN=IDH3A PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.119e-53
Identity = 101/162 (62.35%), Postives = 129/162 (79.63%), Query Frame = -2
Query:  243 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAIC 728
            +HKANIM+ +DGLF   CREVAE   +I + E+ +D  C+ +V++P+ FDVLVMPNLYGDI+SDLCAGLIGGLG+TPS NIG  G+A+ E+VHG+APDIAGK++ANPTALLLS+V MLRH+ L D A RI+ A  +TI +GK  T DLGG++  SDFT+ IC
Sbjct:  198 VHKANIMRMSDGLFLQKCREVAESCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGANGVAIFESVHGTAPDIAGKDMANPTALLLSAVMMLRHMGLFDHAARIEAACFATIKDGKSLTKDLGGNAKCSDFTEEIC 359          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3A_MOUSE (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Mus musculus GN=Idh3a PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.493e-53
Identity = 100/162 (61.73%), Postives = 129/162 (79.63%), Query Frame = -2
Query:  243 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAIC 728
            +HKANIM+ +DGLF   CREVAE   +I + E+ +D  C+ +V++P+ FDVLVMPNLYGDI+SDLCAGLIGGLG+TPS NIG  G+A+ E+VHG+APDIAGK++ANPTALLLS+V MLRH+ L D A +I+ A  +TI +GK  T DLGG++  SDFT+ IC
Sbjct:  198 VHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGANGVAIFESVHGTAPDIAGKDMANPTALLLSAVMMLRHMGLFDHAAKIEAACFATIKDGKSLTKDLGGNAKCSDFTEEIC 359          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
IDH5_ARATH1.551e-7986.67Isocitrate dehydrogenase [NAD] catalytic subunit 5... [more]
IDH6_ARATH1.359e-7584.85Isocitrate dehydrogenase [NAD] catalytic subunit 6... [more]
LEU3_SOLTU1.008e-7093.663-isopropylmalate dehydrogenase, chloroplastic OS=... [more]
IDHA_DICDI7.011e-5666.46Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH3A_DROME5.024e-5462.42Probable isocitrate dehydrogenase [NAD] subunit al... [more]
IDH3A_BOVIN6.562e-5462.35Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_PONAB1.119e-5362.35Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_MACFA1.119e-5362.35Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_HUMAN1.119e-5362.35Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_MOUSE2.493e-5361.73Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]

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Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
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