CX296794
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296794 vs. ExPASy Swiss-Prot
Match: KNAP3_MALDO (Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 7.349e-37 Identity = 100/220 (45.45%), Postives = 113/220 (51.36%), Query Frame = 1 Query: 13 HNHLSQDLPLHHFTDXXXXXXXXXXXXXXXXXXXXXXXIET--TAPNWLNSALLRSXXXXXXXXHFSD---------TNFLNLRXXXXXXXXXXXXXXXXXXXXQTPNQWLSRTSSSLLHRNHSDVIDDVTPANDSIIAAV---ESADLXXXXXXXXXXXXXXXXXXGVVVESGADGVVNWQNARYKSEILSHPLYEQLLSAHVACLRIATPVDQLPRID 630 HNHLSQDLPLHHFTD + APNWLNSALLR+ S+ +NFLNL Q NQWLS++ +LHRNHSDV DDVT A DS+IAA +SADL G GV+NWQNAR+K+EIL+HPLYE LLSAHVACLRIATPVDQLPRID Sbjct: 4 HNHLSQDLPLHHFTDQTHHQHQQYQSDQPDPNSKPPEPHHSFQPAPNWLNSALLRNFTNTDTNPTNSNNANNNGGGVSNFLNLH-----------VTASDSAASQASNQWLSQSHRPILHRNHSDVNDDVTVAGDSMIAAALSHDSADLKPDSILNKNEGG-----------GGDGGVMNWQNARHKAEILAHPLYEPLLSAHVACLRIATPVDQLPRID 201
BLAST of CX296794 vs. ExPASy Swiss-Prot
Match: KNAT3_ARATH (Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.939e-29 Identity = 89/213 (41.78%), Postives = 102/213 (47.89%), Query Frame = 1 Query: 13 HNHLSQDLPLHHFTDXXXXXXXXXXXXXXXXXXXXXXXIETTAPNWLNSALLRSXXXXXXXXHFSDTNFLNLRXXXXXXXXXXXXXXXXXXXXQTP-NQWLSRTSSSLLHRNHS------DVIDDVTPANDSIIAAVESADLXXXXXXXXXXXXXXXXXXGVVVESGADGVVNWQNARYKSEILSHPLYEQLLSAHVACLRIATPVDQLPRID 630 HNHLSQDL +HFTD E PNWLN+ALLRS ++ NFLNL NQWLSR+SS L N++ D IDDVT D++I + ADGVV+WQNAR+K+EILSHPLYEQLLSAHVACLRIATPVDQLPRID Sbjct: 5 HNHLSQDLSFNHFTDQHQPPPPQPPPPPPQQQQHFQ---EAPPPNWLNTALLRSSD--------NNNNFLNLHTATANTTTASSSDSPSSAAAAAAANQWLSRSSSFLQRNNNNNASIVGDGIDDVTGGADTMIQGEMKTGGGENKNDGGGA-------------TAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRID 193
BLAST of CX296794 vs. ExPASy Swiss-Prot
Match: KNAT4_ARATH (Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=1 SV=3) HSP 1 Score: 94.7449 bits (234), Expect = 4.051e-19 Identity = 70/176 (39.77%), Postives = 80/176 (45.45%), Query Frame = 1 Query: 130 ETTAPNWLNSALLRSXXXXXXXXHFSDTNFLNLRXXXXXXXXXXXXXXXXXXXXQTPNQWLSRTSSSLLHRNHS---------DVIDDVTPANDSIIAAVESADLXXXXXXXXXXXXXXXXXXGVVVESGADGVVNWQNARYKSEILSHPLYEQLLSAHVACLRIATPVDQLPRID 630 E+ PNWL LRS D NFLNL NQWLSR+SS L N + DVI+DV +S+I + A+ WQNAR+K+EILSHPLYEQLLSAHVACLRIATPVDQLPRID Sbjct: 33 ESAPPNWL----LRS-----------DNNFLNLHTAASAAATSSDSPSSA-----AANQWLSRSSSFLQRGNTANNNNNETSGDVIEDVPGGEESMIGEKKEAE-------------------------------RWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRID 157
BLAST of CX296794 vs. ExPASy Swiss-Prot
Match: KNAT5_ARATH (Homeobox protein knotted-1-like 5 OS=Arabidopsis thaliana GN=KNAT5 PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 9.665e-13 Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 1 Query: 490 GADGVVNWQNARYKSEILSHPLYEQLLSAHVACLRIATPVDQLPRID 630 G G +W++A YK+ IL HP+YEQLL+AHVACLR+ATPVDQ+PRID Sbjct: 106 GVVGGEDWRSASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRID 152
BLAST of CX296794 vs. ExPASy Swiss-Prot
Match: KNOSD_ORYSJ (Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica GN=OSH45 PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 3.673e-12 Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1 Query: 520 ARYKSEILSHPLYEQLLSAHVACLRIATPVDQLPRID 630 AR K+EIL+HPLYEQLLSAHVACLRIATPVDQLPRID Sbjct: 106 ARCKAEILAHPLYEQLLSAHVACLRIATPVDQLPRID 142
BLAST of CX296794 vs. ExPASy Swiss-Prot
Match: LET12_SOLLC (Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum GN=LET12 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12 Identity = 30/41 (73.17%), Postives = 38/41 (92.68%), Query Frame = 1 Query: 508 NWQNARYKSEILSHPLYEQLLSAHVACLRIATPVDQLPRID 630 +W+ + K++IL+HPLY+QLLSAHV+CLRIATPVDQLPRID Sbjct: 157 SWEREKCKADILNHPLYDQLLSAHVSCLRIATPVDQLPRID 197
BLAST of CX296794 vs. ExPASy Swiss-Prot
Match: HD1_BRANA (Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.304e-11 Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 Query: 472 GVVVESGADG---VVNWQNARYKSEILSHPLYEQLLSAHVACLRIATPVDQLPRID 630 G V G DG VV QN + K EI +HP+Y+QLL+AHVACLR+ATP+DQLP I+ Sbjct: 10 GATVGGGGDGDAAVVAEQNRQMKGEIATHPMYDQLLAAHVACLRVATPIDQLPIIE 65 The following BLAST results are available for this feature:
BLAST of CX296794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296794 ID=CX296794; Name=CX296794; organism=Citrus clementina; type=EST; length=632bpback to top |