CX296794

Overview
NameCX296794
Unique NameCX296794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296794_ssr70 microsatellite CX296794_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
CX296794_ssr241 microsatellite CX296794_ssr241:241..252. BLAST: Citrus ESTs to Prunus persica proteins V1
CX296794_ssr255 microsatellite CX296794_ssr255:255..266. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4231 contig Ccv1_Contig4231:37..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296794 vs. ExPASy Swiss-Prot
Match: KNAP3_MALDO (Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.349e-37
Identity = 100/220 (45.45%), Postives = 113/220 (51.36%), Query Frame = 1
Query:   13 HNHLSQDLPLHHFTDXXXXXXXXXXXXXXXXXXXXXXXIET--TAPNWLNSALLRSXXXXXXXXHFSD---------TNFLNLRXXXXXXXXXXXXXXXXXXXXQTPNQWLSRTSSSLLHRNHSDVIDDVTPANDSIIAAV---ESADLXXXXXXXXXXXXXXXXXXGVVVESGADGVVNWQNARYKSEILSHPLYEQLLSAHVACLRIATPVDQLPRID 630
            HNHLSQDLPLHHFTD                         +   APNWLNSALLR+          S+         +NFLNL                     Q  NQWLS++   +LHRNHSDV DDVT A DS+IAA    +SADL                        G  GV+NWQNAR+K+EIL+HPLYE LLSAHVACLRIATPVDQLPRID
Sbjct:    4 HNHLSQDLPLHHFTDQTHHQHQQYQSDQPDPNSKPPEPHHSFQPAPNWLNSALLRNFTNTDTNPTNSNNANNNGGGVSNFLNLH-----------VTASDSAASQASNQWLSQSHRPILHRNHSDVNDDVTVAGDSMIAAALSHDSADLKPDSILNKNEGG-----------GGDGGVMNWQNARHKAEILAHPLYEPLLSAHVACLRIATPVDQLPRID 201          
BLAST of CX296794 vs. ExPASy Swiss-Prot
Match: KNAT3_ARATH (Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.939e-29
Identity = 89/213 (41.78%), Postives = 102/213 (47.89%), Query Frame = 1
Query:   13 HNHLSQDLPLHHFTDXXXXXXXXXXXXXXXXXXXXXXXIETTAPNWLNSALLRSXXXXXXXXHFSDTNFLNLRXXXXXXXXXXXXXXXXXXXXQTP-NQWLSRTSSSLLHRNHS------DVIDDVTPANDSIIAAVESADLXXXXXXXXXXXXXXXXXXGVVVESGADGVVNWQNARYKSEILSHPLYEQLLSAHVACLRIATPVDQLPRID 630
            HNHLSQDL  +HFTD                        E   PNWLN+ALLRS          ++ NFLNL                         NQWLSR+SS L   N++      D IDDVT   D++I                               + ADGVV+WQNAR+K+EILSHPLYEQLLSAHVACLRIATPVDQLPRID
Sbjct:    5 HNHLSQDLSFNHFTDQHQPPPPQPPPPPPQQQQHFQ---EAPPPNWLNTALLRSSD--------NNNNFLNLHTATANTTTASSSDSPSSAAAAAAANQWLSRSSSFLQRNNNNNASIVGDGIDDVTGGADTMIQGEMKTGGGENKNDGGGA-------------TAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRID 193          
BLAST of CX296794 vs. ExPASy Swiss-Prot
Match: KNAT4_ARATH (Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.051e-19
Identity = 70/176 (39.77%), Postives = 80/176 (45.45%), Query Frame = 1
Query:  130 ETTAPNWLNSALLRSXXXXXXXXHFSDTNFLNLRXXXXXXXXXXXXXXXXXXXXQTPNQWLSRTSSSLLHRNHS---------DVIDDVTPANDSIIAAVESADLXXXXXXXXXXXXXXXXXXGVVVESGADGVVNWQNARYKSEILSHPLYEQLLSAHVACLRIATPVDQLPRID 630
            E+  PNWL    LRS           D NFLNL                        NQWLSR+SS L   N +         DVI+DV    +S+I   + A+                                WQNAR+K+EILSHPLYEQLLSAHVACLRIATPVDQLPRID
Sbjct:   33 ESAPPNWL----LRS-----------DNNFLNLHTAASAAATSSDSPSSA-----AANQWLSRSSSFLQRGNTANNNNNETSGDVIEDVPGGEESMIGEKKEAE-------------------------------RWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRID 157          
BLAST of CX296794 vs. ExPASy Swiss-Prot
Match: KNAT5_ARATH (Homeobox protein knotted-1-like 5 OS=Arabidopsis thaliana GN=KNAT5 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.665e-13
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 1
Query:  490 GADGVVNWQNARYKSEILSHPLYEQLLSAHVACLRIATPVDQLPRID 630
            G  G  +W++A YK+ IL HP+YEQLL+AHVACLR+ATPVDQ+PRID
Sbjct:  106 GVVGGEDWRSASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRID 152          
BLAST of CX296794 vs. ExPASy Swiss-Prot
Match: KNOSD_ORYSJ (Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica GN=OSH45 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.673e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1
Query:  520 ARYKSEILSHPLYEQLLSAHVACLRIATPVDQLPRID 630
            AR K+EIL+HPLYEQLLSAHVACLRIATPVDQLPRID
Sbjct:  106 ARCKAEILAHPLYEQLLSAHVACLRIATPVDQLPRID 142          
BLAST of CX296794 vs. ExPASy Swiss-Prot
Match: LET12_SOLLC (Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum GN=LET12 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 30/41 (73.17%), Postives = 38/41 (92.68%), Query Frame = 1
Query:  508 NWQNARYKSEILSHPLYEQLLSAHVACLRIATPVDQLPRID 630
            +W+  + K++IL+HPLY+QLLSAHV+CLRIATPVDQLPRID
Sbjct:  157 SWEREKCKADILNHPLYDQLLSAHVSCLRIATPVDQLPRID 197          
BLAST of CX296794 vs. ExPASy Swiss-Prot
Match: HD1_BRANA (Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.304e-11
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1
Query:  472 GVVVESGADG---VVNWQNARYKSEILSHPLYEQLLSAHVACLRIATPVDQLPRID 630
            G  V  G DG   VV  QN + K EI +HP+Y+QLL+AHVACLR+ATP+DQLP I+
Sbjct:   10 GATVGGGGDGDAAVVAEQNRQMKGEIATHPMYDQLLAAHVACLRVATPIDQLPIIE 65          
The following BLAST results are available for this feature:
BLAST of CX296794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
KNAP3_MALDO7.349e-3745.45Homeobox protein knotted-1-like 3 OS=Malus domesti... [more]
KNAT3_ARATH1.939e-2941.78Homeobox protein knotted-1-like 3 OS=Arabidopsis t... [more]
KNAT4_ARATH4.051e-1939.77Homeobox protein knotted-1-like 4 OS=Arabidopsis t... [more]
KNAT5_ARATH9.665e-1368.09Homeobox protein knotted-1-like 5 OS=Arabidopsis t... [more]
KNOSD_ORYSJ3.673e-1291.89Homeobox protein knotted-1-like 13 OS=Oryza sativa... [more]
LET12_SOLLC8.182e-1273.17Homeobox protein knotted-1-like LET12 OS=Solanum l... [more]
HD1_BRANA5.304e-1158.93Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05802H06SK FerrChloL1 Citrus clementina cDNA clone C05802H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296794 ID=CX296794; Name=CX296794; organism=Citrus clementina; type=EST; length=632bp
CATGGCGTTTCCCACAATCACCTCTCGCAAGACCTTCCTCTTCATCACTT
CACCGACCAACAACAACAGCAACAACAACAACCACCGTCACCTCCACAGC
AACAACACCACCAACACCAACAAAGCATCGAAACGACAGCGCCTAATTGG
CTTAACTCTGCGCTTCTTCGCTCACAACAGGCGCAGCAACAGGCGGCTCA
CTTCTCCGACACCAATTTCCTTAACCTACGCACCACAGCAAACAACAACA
ACAGCAACAACAACAACACTGCCTCCGATTCCGACGCTTCGCAGACGCCG
AACCAATGGCTCTCCCGCACGTCCTCCTCTCTCCTCCACCGCAACCACAG
TGACGTCATCGACGACGTCACGCCTGCCAACGACTCCATCATCGCGGCCG
TCGAATCCGCCGATTTGAAGAACGCCAACAGCGAGAACATGAACAACGCC
AGTACTAATAACAAGAGCGAAGGGGTGGTGGTCGAGAGCGGCGCCGACGG
AGTTGTCAACTGGCAGAATGCGAGGTACAAGTCGGAGATATTGTCGCATC
CGCTGTACGAGCAGCTGCTCTCGGCACACGTGGCTTGCTTGAGGATCGCC
ACGCCGGTGGATCAGCTGCCGAGGATTGACGC
back to top