CX296796

Overview
NameCX296796
Unique NameCX296796
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length317
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig588 contig Ccv1_Contig588:984..1300. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296796 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.742e-44
Identity = 85/104 (81.73%), Postives = 89/104 (85.58%), Query Frame = 2 
Query:    5 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 316
            TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVRKW          K LVNSKE  P+FEQP+MT++K
Sbjct:  289 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDK 392
[Close]
BLAST of CX296796 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.067e-44
Identity = 85/104 (81.73%), Postives = 89/104 (85.58%), Query Frame = 2 
Query:    5 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 316
            TLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTFEQP+MT+EK
Sbjct:  289 TLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEK 392
[Close]
BLAST of CX296796 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.284e-43
Identity = 82/104 (78.85%), Postives = 88/104 (84.62%), Query Frame = 2 
Query:    5 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 316
            TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTFEQP+MT++K
Sbjct:  289 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDK 392
[Close]
BLAST of CX296796 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.317e-43
Identity = 81/104 (77.88%), Postives = 88/104 (84.62%), Query Frame = 2 
Query:    5 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 316
            TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVRKW          K LVNS+E  PTF+QP+MT+EK
Sbjct:  276 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEK 379
[Close]
BLAST of CX296796 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 9.556e-43
Identity = 80/104 (76.92%), Postives = 88/104 (84.62%), Query Frame = 2 
Query:    5 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 316
            TLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW          K LVNS+E  P FEQP+MT+EK
Sbjct:  280 TLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEK 383
[Close]
BLAST of CX296796 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 6.194e-42
Identity = 78/104 (75.00%), Postives = 87/104 (83.65%), Query Frame = 2 
Query:    5 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 316
            TLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTF+QP+M+++K
Sbjct:  291 TLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDK 394
[Close]
BLAST of CX296796 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.057e-41
Identity = 79/104 (75.96%), Postives = 88/104 (84.62%), Query Frame = 2 
Query:    5 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 316
            TLYAPLIRDGRM+KFYWAPTREDRIG+C GIFR D V  +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW          ++LVNSKE+ PTF+QP+MT+EK
Sbjct:  286 TLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEK 389
[Close]
BLAST of CX296796 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.380e-41
Identity = 78/104 (75.00%), Postives = 88/104 (84.62%), Query Frame = 2 
Query:    5 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 316
            TLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW          K LVNS++   TFEQP+MT+EK
Sbjct:  279 TLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 382
[Close]
BLAST of CX296796 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.802e-41
Identity = 77/104 (74.04%), Postives = 88/104 (84.62%), Query Frame = 2 
Query:    5 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 316
            TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVRKW          + L+NS++  PTFEQP+MT+EK
Sbjct:  288 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEK 391
[Close]
BLAST of CX296796 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 3.074e-41
Identity = 78/104 (75.00%), Postives = 87/104 (83.65%), Query Frame = 2 
Query:    5 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 316
            TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR+W          + LVNSKE  PTFEQP++T+EK
Sbjct:  285 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEK 388
The following BLAST results are available for this feature:
BLAST of CX296796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA1_LARTR1.742e-4481.73Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO5.067e-4481.73Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR3.284e-4378.85Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU7.317e-4377.88Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ9.556e-4376.92Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU6.194e-4275.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.057e-4175.96Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.380e-4175.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.802e-4174.04Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE3.074e-4175.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC05802H08SK FerrChloL1 Citrus clementina cDNA clone C05802H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296796 ID=CX296796; Name=CX296796; organism=Citrus clementina; type=EST; length=317bp
TCTCACATTGTATGCTCCTCTCATCCGTGATGGTCGTATGGAGAAATTCT
ACTGGGCACCTACAAGGGAGGACCGTATTGGTGTGTGCAAGGGTATCTTC
AGGAATGACAATGTGGCTGATGACGACATTGTCAAGCTTGTCGACACCTT
CCCCGGCCAATCCATTGATTTCTTTGGAGCCCTGAGGGCCAGAGTCTATG
ATGATGAGGTGAGGAAGTGGATCTCTGGTGTTGGTGTTGGAAGCATTGGC
AAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAACATTCGAGCAACCAAG
GATGACAATGGAGAAGC
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