CX296802

Overview
NameCX296802
Unique NameCX296802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig797 contig Ccv1_Contig797:45..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.693e-53
Identity = 100/104 (96.15%), Postives = 103/104 (99.04%), Query Frame = -1 
Query:  369 KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 680
            KRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP++TRLN
Sbjct:   13 KRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLN 116
[Close]
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.584e-51
Identity = 95/104 (91.35%), Postives = 101/104 (97.12%), Query Frame = -1 
Query:  369 KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 680
            KRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DGTKRLCHIRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP++ RLN
Sbjct:   13 KRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLN 116
[Close]
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.344e-42
Identity = 82/104 (78.85%), Postives = 90/104 (86.54%), Query Frame = -1 
Query:  369 KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 680
            +RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   13 RRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1AX_MOUSE (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ay PE=2 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.344e-42
Identity = 82/104 (78.85%), Postives = 90/104 (86.54%), Query Frame = -1 
Query:  369 KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 680
            +RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   13 RRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1AX_HUMAN (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.344e-42
Identity = 82/104 (78.85%), Postives = 90/104 (86.54%), Query Frame = -1 
Query:  369 KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 680
            +RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   13 RRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1AY_PANTR (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan troglodytes GN=EIF1AY PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.994e-42
Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = -1 
Query:  369 KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 680
            +RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EA+C DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   13 RRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1AY_HUMAN (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Homo sapiens GN=EIF1AY PE=1 SV=4)

HSP 1 Score: 171.785 bits (434), Expect = 2.994e-42
Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = -1 
Query:  369 KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 680
            +RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EA+C DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   13 RRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1A_RAT (Eukaryotic translation initiation factor 1A OS=Rattus norvegicus GN=Eif1a PE=2 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 3.911e-42
Identity = 80/104 (76.92%), Postives = 90/104 (86.54%), Query Frame = -1 
Query:  369 KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 680
            +RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG +RLCHIRGK+ KKVWI   DIIL+GLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   13 RRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1A_MOUSE (Eukaryotic translation initiation factor 1A OS=Mus musculus GN=Eif1a PE=2 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 3.911e-42
Identity = 80/104 (76.92%), Postives = 90/104 (86.54%), Query Frame = -1 
Query:  369 KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 680
            +RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG +RLCHIRGK+ KKVWI   DIIL+GLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   13 RRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1A_RABIT (Eukaryotic translation initiation factor 1A OS=Oryctolagus cuniculus GN=EIF1A PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.065e-39
Identity = 79/104 (75.96%), Postives = 88/104 (84.62%), Query Frame = -1 
Query:  369 KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 680
            +RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAM  DG KRL HIRGK+ KKVWI   DIILVGLR+YQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   13 RRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMLFDGVKRLFHIRGKLRKKVWINTSDIILVGLREYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
The following BLAST results are available for this feature:
BLAST of CX296802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
IF1A_ONOVI1.693e-5396.15Eukaryotic translation initiation factor 1A OS=Ono... [more]
IF1A_WHEAT1.584e-5191.35Eukaryotic translation initiation factor 1A OS=Tri... [more]
IF1AX_PONAB1.344e-4278.85Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AX_MOUSE1.344e-4278.85Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AX_HUMAN1.344e-4278.85Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AY_PANTR2.994e-4277.88Eukaryotic translation initiation factor 1A, Y-chr... [more]
IF1AY_HUMAN2.994e-4277.88Eukaryotic translation initiation factor 1A, Y-chr... [more]
IF1A_RAT3.911e-4276.92Eukaryotic translation initiation factor 1A OS=Rat... [more]
IF1A_MOUSE3.911e-4276.92Eukaryotic translation initiation factor 1A OS=Mus... [more]
IF1A_RABIT1.065e-3975.96Eukaryotic translation initiation factor 1A OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionC05803A02SK FerrChloL1 Citrus clementina cDNA clone C05803A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296802 ID=CX296802; Name=CX296802; organism=Citrus clementina; type=EST; length=680bp
CCTAATTGCCACAACAAATTATTATTGACATTAAAGATCTGCACCATACC
AGTATAAGATTCCATTCTAGAAATACCACTTCAAAAAAAGTGCAGAACTA
AACAAAATTAATAAGCAAGTAATAGGCGTTACACAAAATATGACAGGCTC
ACCATTAAAAATTCCAAATATATAAGCTGCAAACACATATTTTCAGCTTT
TAAGTAACCAATACATTGGCATACTCCATTTTTGCTAAATATTGAACATA
AACCCCAGACAGAGTCGATTCTCGGAGCCTAGATCTTATCAATATCTTCG
TCTTCAAACTCGATGTAATCATTATCAGCGCCATCATCCTCTTCATCAAG
ACCACCAGCAATGCCCTCATTGAGACGGGTACTCTCTGGAAGTTCACCAT
AAGCCTTCAGAAGCCTTGCCTCGTCGGGCATATACTTGAGGATGACATCA
GCCTTGTCATCCTGATAATCACGTAGGCCAACAAGTATTATATCACCAGC
TGCAATCCAAACCTTTTTGTGCATCTTCCCACGGATGTGGCAAAGACGCT
TGGTTCCATCGATGCACATAGCTTCACACCGACCATTGCCGAGCATACGA
AGGACTTGGGCATATTCCTGTCCGTCTTCCTTGAAGACAAGCTCACGCTT
CTCGTCGTCAGCTTCATTCTTTCCCCTCTT
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