CX296804

Overview
NameCX296804
Unique NameCX296804
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15301 contig Ccv1_Contig15301:529..1051. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.065e-31
Identity = 65/96 (67.71%), Postives = 76/96 (79.17%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 288
            +  +PLD  LIR LA  HE+LITVEEGS+GGFGSHV  FL L G+LDG LK R MVLPDRYIDHG+PADQL E+GL   HI+AT L+L+G P+EAL
Sbjct:  621 RFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLIGAPREAL 716          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.817e-31
Identity = 63/98 (64.29%), Postives = 80/98 (81.63%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI 294
            +  +PLD  LIR+LA+ HE+L+TVEEGS+GGFGSHV  F+ L G+LDG LK R +VLPDRYIDHGSPADQL E+GL+  HI+ATV ++LG+ +EAL I
Sbjct:  617 RFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREALAI 714          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.623e-30
Identity = 61/96 (63.54%), Postives = 77/96 (80.21%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 288
            +  +PLD  LIR LA  HE+L+TVE+GS+GGFGSHV  F+ L G+LDG LK R +VLPDRYIDHGSPADQL E+GL+  HI+ATV ++LG+ +EAL
Sbjct:  620 RFCKPLDRALIRSLAKSHEVLVTVEKGSIGGFGSHVVQFMALDGLLDGKLKWRPIVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNILGQTREAL 715          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_RHOCS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxs PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.821e-23
Identity = 52/90 (57.78%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 270
            +  +P+D  LIR+LA +HE+LITVEEGS+GGFGS+V HFL  SG+LD  LK+R MVLPD + D  +PA Q +E+GL++RHI  T L  LG
Sbjct:  541 RFAKPIDEALIRRLAQDHEVLITVEEGSIGGFGSYVLHFLAQSGLLDQGLKVRPMVLPDIFQDQDAPAKQYDEAGLNARHIVETALKALG 630          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_MAGSA (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dxs PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.036e-23
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 288
            + ++PLD +LI +LA EHE+LITVEEGSVGGFGSHV H L   G LD  LK+R + LPD +++H +PA Q E+ GL++  I ATVL+ LG  +  +
Sbjct:  547 RFMKPLDEELILRLAREHEVLITVEEGSVGGFGSHVLHLLASKGALDNGLKVRPLALPDVFVEHDAPAIQYEKIGLNASGIVATVLATLGEARSVV 642          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_BRASB (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=dxs PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.650e-22
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI 294
            + ++PLD +L+ +LA EHEILIT+EEGS+GGFGSHV  +L   G+LDG LK+RSMVLPD + DH +PA     +GL ++ I   V   LG+   A ++
Sbjct:  541 RFMKPLDEELVLKLAREHEILITIEEGSIGGFGSHVMQYLADQGMLDGGLKMRSMVLPDEFQDHDTPAAMYARAGLDAKGIVRKVFEALGKDYTAEVV 638          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_BRASO (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain ORS278) GN=dxs PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.305e-21
Identity = 47/91 (51.65%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 273
            + ++PLD +L+ +LA +HEILIT+EEGS+GGFGSHV  +L   G+LDG LK+RSMVLPD + DH +PA     +GL ++ I   V  +LG+
Sbjct:  541 RFMKPLDEELVLKLARDHEILITIEEGSIGGFGSHVMQYLADQGMLDGGLKMRSMVLPDEFQDHDTPAAMYARAGLDAKGIVRKVFEVLGK 631          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_RHOP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=dxs PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.704e-21
Identity = 49/95 (51.58%), Postives = 67/95 (70.53%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 285
            + ++PLD DL+ +LANEHEILIT+EEGS+GGFGSHV   L+  G LDG +K+R+MVLPD ++DH +PA     +GL ++ I   V   LG+   A
Sbjct:  538 RFMKPLDVDLVIKLANEHEILITIEEGSIGGFGSHVMQTLSDHGKLDGEVKMRAMVLPDVFLDHDTPAAMYAAAGLDAKAIVKKVFEALGKEHAA 632          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_BEII9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dxs PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.704e-21
Identity = 52/96 (54.17%), Postives = 66/96 (68.75%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGP-LKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 285
            +  +PLD DL+R+LA  HE+LIT+EEGSVGGFGS V   L   G+LDG  LK RSMVLPD ++DH  P     ++GL ++ I A VL+ LGR  EA
Sbjct:  541 RFAKPLDLDLVRRLAKNHEVLITIEEGSVGGFGSFVMQALAEEGLLDGTGLKFRSMVLPDTFLDHDKPEKLYAQAGLDAKGIVAKVLATLGRENEA 636          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_MESSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhizobium sp. (strain BNC1) GN=dxs PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.226e-21
Identity = 46/95 (48.42%), Postives = 67/95 (70.53%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 285
            +  +PLD DLIR+LA EHE+L+TVEEGS+GGFG+HV HFL   G+L+  LK+R +V+PD ++D   P     ++GL +  I  TV + LG+ ++A
Sbjct:  553 RFAKPLDADLIRRLAREHEVLVTVEEGSIGGFGAHVLHFLAHEGLLENGLKVRPLVMPDIFMDQAKPEKMYAKAGLDAAGIVKTVFAALGQAEQA 647          
The following BLAST results are available for this feature:
BLAST of CX296804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
DXS_ARATH1.065e-3167.71Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ORYSJ1.817e-3164.29Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN2.623e-3063.54Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_RHOCS1.821e-2357.781-deoxy-D-xylulose-5-phosphate synthase OS=Rhodosp... [more]
DXS_MAGSA9.036e-2353.131-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_BRASB7.650e-2250.001-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]
DXS_BRASO1.305e-2151.651-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]
DXS_RHOP21.704e-2151.581-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_BEII91.704e-2154.171-deoxy-D-xylulose-5-phosphate synthase OS=Beijeri... [more]
DXS_MESSB2.226e-2148.421-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhi... [more]

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Properties
Property NameValue
Genbank descriptionC05803A05SK FerrChloL1 Citrus clementina cDNA clone C05803A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296804 ID=CX296804; Name=CX296804; organism=Citrus clementina; type=EST; length=523bp
AAGATTTTGCAACCTTTGGATACAGACCTCATTAGACAGTTGGCCAATGA
GCATGAAATCCTAATTACTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCT
CTCATGTATGTCACTTTCTAACCTTAAGTGGCATTCTGGATGGACCTCTC
AAGTTGAGATCAATGGTGCTTCCTGATAGATACATTGACCATGGATCACC
AGCCGATCAGCTTGAAGAATCAGGGCTCTCCTCAAGGCATATCTCTGCAA
CAGTCTTATCTCTCTTAGGGAGGCCAAAAGAAGCCCTTCTGATTTAAGTA
ATCATACAAAATCAAACAACATCTTGCCCTTCGGATCCAACTTACAATTC
CAAGTTGGGGGTGTTATACACTATAAGGTCCAACTCTTAGAATCTTTACC
TTCATATCCCCTGTAACCATGAAGCATTACCGTGGGATTATAAATGTAAT
GGTCAAGCCTTTTGTTGTTTCTGTACATTCACAATTTTTTCTTGTAATAA
AGATACAAGGCATTGATCTTCAC
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