CX296810

Overview
NameCX296810
Unique NameCX296810
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296810 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.375e-29
Identity = 64/106 (60.38%), Postives = 79/106 (74.53%), Query Frame = -2
Query:  257 SEEVAEDKAKPSCRIRHEGAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 574
            +++  +D  KP    R   AFFVFME+FRK +KE HPNNKSVA VGKA G+KWK ++  EKAPF+ +AEKRK +Y KN+Q YNK+ A G  AAEE ESDKS+SEVN
Sbjct:   26 TKKAVKDPNKPK---RPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEEEESDKSRSEVN 126          
BLAST of CX296810 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27
Identity = 60/104 (57.69%), Postives = 76/104 (73.08%), Query Frame = -2
Query:  257 EVAEDKAKPSCRIRHEGAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 568
            + A+D  KP    R   AFFVFMEEFRK F + HP NK+V+ VGKAAG KWK+MS+ EKAP+V ++EKRK +Y KNM+ YNK+ A+G    +E ES+KS SEVN
Sbjct:   36 KAAKDPNKPK---RPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVN 136          
BLAST of CX296810 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = -2
Query:  257 GRRFISEEVAEDKAKPSCRIRHEGAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 589
            G++    +  +D  KP    R   AFFVFM +FR+Q+K+ HPNNKSVA VGKA GE+WKS+SE+EKAP+V+RA K+K +Y   +Q YNK+L       +E  SDKSKSEVN
Sbjct:   30 GKKPAKGKEPKDPNKPK---RPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLE---GKDDEEGSDKSKSEVN 134          
BLAST of CX296810 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24
Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = -2
Query:  257 EVAEDKAKPSCRIRHEGAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAA--------EENESDKSKSEVN 568
            +  +D  KP    R   AFFVFMEEFRK+FKE +P NKSVA VGKAAG++WKS+SE +KAP+V +A K K +YNK +  YNK  +     A        +E ESDKSKSEVN
Sbjct:   33 KAGKDPNKPK---RAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVN 141          
BLAST of CX296810 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.584e-23
Identity = 59/115 (51.30%), Postives = 73/115 (63.48%), Query Frame = -2
Query:  257 EVAEDKAKPSCRIRHEGAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN-----------KQLADGVNAAEENESDKSKSEVN 568
            +  +D  KP    R   AFFVFM EFR++FK+ +P NKSVA VGKAAGE+WKS+SE EKAP+V +A K K +YNK +  YN           K  A  V   +E ESDKSKSE+N
Sbjct:   34 KAGKDPNKPK---RAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEVEEEDEEESDKSKSEIN 145          
The following BLAST results are available for this feature:
BLAST of CX296810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_IPONI5.375e-2960.38HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_SOYBN3.852e-2757.69HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_VICFA1.789e-2453.15HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
MNB1B_MAIZE3.986e-2453.57DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT2.584e-2351.30HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC05803B01SK FerrChloL1 Citrus clementina cDNA clone C05803B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296810 ID=CX296810; Name=CX296810; organism=Citrus clementina; type=EST; length=713bp
AAATAATACATATAAATGTTGAAACTAGATGATTAAAGACTTAAGAGAAC
ATTTAGGTACATATCCATCCATATGGTGCTTCAGTAAATCCTGAACAACA
CTTGATTTCTTTCCTAATCTAATCTAAAAGGCTAAGGGTTATCATGTTAT
AAGCAATTCTACTAGATTGCTAAAACTTCAACATTTTTGAATCCTTCGCT
GCCATTCTCTAGTCATCATCTTCCTCCTCTCCACTGCCTTCTTCATCATC
CTCATCATTCACTTCAGACTTGGACTTGTCAGATTCATTTTCCTCAGCAG
CATTTACTCCATCAGCCAACTGCTTGTTGTAATCCTGCATGTTCTTGTTG
TAATCAGACTTTCTTTTCTCAGCCCTTTCAACGAATGGCGCTTTCTCATC
TTCTGACATTGACTTCCATTTTTCTCCAGCAGCTTTGCCAACAGTAGCAA
CAGATTTATTGTTAGGATGAGCTTCTTTGAACTGCTTCCTGAACTCCTCC
ATGAAAACGAAGAAAGCACCCTCGTGCCGAATTCGGCACGAGGGTTTTGC
TTTGTCCTCGGCTACTTCTTCGCTGATAAATCGACGGCCACTTACGAATG
CGTTTGTCTCAGTTTCTTCATTTTCAGCTGCCAATTGTAGTGACAATGTT
AATGTTAACAAAAGAAGAATCTCCTGTGAAGTAGCTGTAAAATCCAACAA
TTCACGGCATCCG
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