CX296814

Overview
NameCX296814
Unique NameCX296814
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3761 contig Ccv1_Contig3761:47..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296814 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 6.965e-72
Identity = 123/146 (84.25%), Postives = 135/146 (92.47%), Query Frame = 2
Query:  191 SLPGDYGFDPLGLGKDPSFLKWHREAELIHGRWAMTAIVGIFVRHE*SDIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWFDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFYPL*LAGTIKDGVYIPDTEKL 628
            SLPGDYGFDPLGLGKDP+FLKW+REAELIHGRWAM A++GIFV    S IPWFEAGADPGAIAPFSFG+LLGTQL+LMGWVESKRW DFF+P+SQSVEWATPWS+TAENFAN TGEQGYPGGKFF PL LAGT+ +GVY+PDTEKL
Sbjct:   74 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKL 219          

HSP 2 Score: 76.6406 bits (187), Expect = 1.130e-13
Identity = 45/84 (53.57%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 AVLNRLGSSFINGGKKSQALLAG--TNRV--TSSKKSAVVAALPPKKSWIPAVKGGGNLINPEWLDGLSPR*LRIRPTWTWKGP 240
            AVLN L SSF+ GG KSQALLA     RV   ++ K   V A   KKSWIPAV+GGGNL++PEWLDG  P      P    K P
Sbjct:    7 AVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDP 90          
BLAST of CX296814 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.313e-70
Identity = 121/146 (82.88%), Postives = 135/146 (92.47%), Query Frame = 2
Query:  191 SLPGDYGFDPLGLGKDPSFLKWHREAELIHGRWAMTAIVGIFVRHE*SDIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWFDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFYPL*LAGTIKDGVYIPDTEKL 628
            SLPGD+GFDPLGLGKDP+FLKW+REAELIHGRWAM A++GIFV    + IPWFEAGADPGA+APFSFG+LLGTQLLLMGWVESKRW DFF+P+SQSVEWATPWSRTAENF+N+TGEQGYPGGKFF PL LAGTI +GVY PDT+KL
Sbjct:   79 SLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKL 224          

HSP 2 Score: 74.3294 bits (181), Expect = 5.609e-13
Identity = 43/87 (49.43%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    1 AVLNRLGSSFINGGKKS-QALLAGTNRV------TSSKKSAVVAALPPKKSWIPAVKGGGNLINPEWLDGLSPR*LRIRPTWTWKGP 240
            A++N   S F++GGKKS Q+LL   ++V      TS K   V AA  PKKSWIPAVKGGGN ++PEWLDG  P      P    K P
Sbjct:    9 AIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDP 95          
BLAST of CX296814 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.715e-70
Identity = 121/146 (82.88%), Postives = 134/146 (91.78%), Query Frame = 2
Query:  191 SLPGDYGFDPLGLGKDPSFLKWHREAELIHGRWAMTAIVGIFVRHE*SDIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWFDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFYPL*LAGTIKDGVYIPDTEKL 628
            SLPGD+GFDPLGLGKDP+FLKW+REAELIHGRWAM A++GIFV    S IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW DFF+ +SQS++WATPWS+TAENFAN TGEQGYPGGKFF PL LAGT+ +GVY+PDTEKL
Sbjct:   74 SLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKL 219          

HSP 2 Score: 85.8853 bits (211), Expect = 1.863e-16
Identity = 48/83 (57.83%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 AVLNRLGSSFINGGKKSQALLAG--TNRVTSSKKSAVVAA-LPPKKSWIPAVKGGGNLINPEWLDGLSPR*LRIRPTWTWKGP 240
            AVLN L SSF+ GGKK+QALL    T RVT+ K+  V AA + PKKSWIPAVK GGNL++PEWLDG  P      P    K P
Sbjct:    8 AVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDP 90          
BLAST of CX296814 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.342e-20
Identity = 52/134 (38.81%), Postives = 70/134 (52.24%), Query Frame = 2
Query:  191 SLPGDYGFDPLGLGKDPSFLKWHREAELIHGRWAMTAIVGIFVRHE*SDI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWFDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFYPL 574
            SLPGD+GFDPLGLG DP  LKW+ +AEL+H RWAM    GIF+    + I       W+ AG            +L   +L+L+GW E +RW D   P   + +   P ++          + GYPGG +F PL
Sbjct:   81 SLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFT---DTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPL 205          

HSP 2 Score: 25.0238 bits (53), Expect = 2.342e-20
Identity = 19/66 (28.79%), Postives = 29/66 (43.94%), Query Frame = 1
Query:    1 AVLNRLGSSFINGGKKSQALLAGTNRVTSSKKSAVVAALPPKKSWIPAVKGGGNLINPEWLDGLSP 198
            +++    +SF+ GGK+ +         + S   + VAA P +  W P          PEWLDG  P
Sbjct:   25 SIVGATKASFL-GGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTP------PEWLDGSLP 83          
BLAST of CX296814 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.154e-20
Identity = 50/134 (37.31%), Postives = 70/134 (52.24%), Query Frame = 2
Query:  191 SLPGDYGFDPLGLGKDPSFLKWHREAELIHGRWAMTAIVGIFVRHE*SDI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWFDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFYPL 574
            SLPGD+GFDPLGL  DP  L+W+++AEL+H RWAM    GIF+    + I       W+ AG            +L   +L+L+GW E +RW D   P   + +   P ++          + GYPGG +F PL
Sbjct:   81 SLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFT---DTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPL 205          

HSP 2 Score: 27.7202 bits (60), Expect = 5.154e-20
Identity = 18/66 (27.27%), Postives = 28/66 (42.42%), Query Frame = 1
Query:    1 AVLNRLGSSFINGGKKSQALLAGTNRVTSSKKSAVVAALPPKKSWIPAVKGGGNLINPEWLDGLSP 198
            +++    +SF+ GG++ +     T     S  +  VAA P +  W P          P WLDG  P
Sbjct:   25 SIVGTTKASFL-GGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP------GSTPPPWLDGSLP 83          
BLAST of CX296814 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 52/141 (36.88%), Postives = 75/141 (53.19%), Query Frame = 2
Query:  191 SLPGDYGFDPLGLGKDPSFLKWHREAELIHGRWAMTAIVGIFVRHE*SDI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWFDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFYPL*LAGTIK 595
            SLPGD GFDPLGL +DP  L+W  +AEL++GRWAM  + G+ +    + I       W+ AG +       S  +L   + +L  +VE +RW D  NP S + +         + ++   GE GYPGG  F PL  A T++
Sbjct:   69 SLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFA---SSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPAGEVGYPGG-IFNPLNFAPTLE 199          
BLAST of CX296814 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.245e-16
Identity = 53/139 (38.13%), Postives = 75/139 (53.96%), Query Frame = 2
Query:  191 SLPGDYGFDPLGLGKDPSFLKWHREAELIHGRWAMTAIVG-----IFVRHE*SDIP-WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWFDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFYPL*LAGT 589
            SL GD GFDPLGL +DP  LKW  +AEL++GRWAM  + G     +F +    ++P W++AG +       S  +L   + +L  +VE +RW D  NP S + +         + ++   GE GYPGG  F PL  A T
Sbjct:   70 SLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFA---SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPKGEVGYPGG-IFNPLNFAPT 198          
The following BLAST results are available for this feature:
BLAST of CX296814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CB4A_SOLLC6.965e-7284.25Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4_SPIOL1.313e-7082.88Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4B_SOLLC1.715e-7082.88Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB12_PETHY2.342e-2038.81Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC5.154e-2037.31Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_PEA4.150e-1636.88Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH9.245e-1638.13Chlorophyll a-b binding protein 4, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionC05803B05SK FerrChloL1 Citrus clementina cDNA clone C05803B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296814 ID=CX296814; Name=CX296814; organism=Citrus clementina; type=EST; length=628bp
GCTGTGTTAAACAGATTGGGTTCTTCCTTCATAAATGGTGGTAAGAAGAG
CCAGGCTCTTTTGGCTGGCACGAATAGAGTGACAAGTTCTAAAAAGTCAG
CTGTGGTAGCTGCTCTTCCACCTAAAAAATCTTGGATTCCTGCTGTTAAA
GGTGGTGGCAACCTCATTAATCCCGAATGGCTCGATGGTCTCTCTCCCAG
GTGACTACGGATTCGACCCACTTGGACTTGGAAAGGACCCATCATTCCTG
AAATGGCACAGAGAAGCAGAACTGATCCACGGACGATGGGCAATGACTGC
AATTGTTGGAATATTCGTCAGACATGAGTGAAGTGACATTCCATGGTTCG
AGGCTGGAGCAGATCCTGGAGCCATAGCACCCTTCTCCTTCGGCTCACTC
CTGGGAACCCAGCTTCTCCTTATGGGTTGGGTTGAGAGCAAGCGGTGGTT
TGATTTTTTCAATCCTGAATCTCAATCAGTTGAATGGGCAACACCTTGGT
CAAGAACTGCTGAAAACTTTGCCAATGCTACTGGTGAACAAGGCTACCCT
GGTGGAAAGTTTTTTTATCCCTTATGATTGGCTGGAACAATTAAGGATGG
AGTCTACATTCCTGACACTGAGAAGCTT
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