CX296814
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296814 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 270.011 bits (689), Expect = 6.965e-72 Identity = 123/146 (84.25%), Postives = 135/146 (92.47%), Query Frame = 2 Query: 191 SLPGDYGFDPLGLGKDPSFLKWHREAELIHGRWAMTAIVGIFVRHE*SDIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWFDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFYPL*LAGTIKDGVYIPDTEKL 628 SLPGDYGFDPLGLGKDP+FLKW+REAELIHGRWAM A++GIFV S IPWFEAGADPGAIAPFSFG+LLGTQL+LMGWVESKRW DFF+P+SQSVEWATPWS+TAENFAN TGEQGYPGGKFF PL LAGT+ +GVY+PDTEKL Sbjct: 74 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKL 219 HSP 2 Score: 76.6406 bits (187), Expect = 1.130e-13 Identity = 45/84 (53.57%), Postives = 51/84 (60.71%), Query Frame = 1 Query: 1 AVLNRLGSSFINGGKKSQALLAG--TNRV--TSSKKSAVVAALPPKKSWIPAVKGGGNLINPEWLDGLSPR*LRIRPTWTWKGP 240 AVLN L SSF+ GG KSQALLA RV ++ K V A KKSWIPAV+GGGNL++PEWLDG P P K P Sbjct: 7 AVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDP 90
BLAST of CX296814 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 265.774 bits (678), Expect = 1.313e-70 Identity = 121/146 (82.88%), Postives = 135/146 (92.47%), Query Frame = 2 Query: 191 SLPGDYGFDPLGLGKDPSFLKWHREAELIHGRWAMTAIVGIFVRHE*SDIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWFDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFYPL*LAGTIKDGVYIPDTEKL 628 SLPGD+GFDPLGLGKDP+FLKW+REAELIHGRWAM A++GIFV + IPWFEAGADPGA+APFSFG+LLGTQLLLMGWVESKRW DFF+P+SQSVEWATPWSRTAENF+N+TGEQGYPGGKFF PL LAGTI +GVY PDT+KL Sbjct: 79 SLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKL 224 HSP 2 Score: 74.3294 bits (181), Expect = 5.609e-13 Identity = 43/87 (49.43%), Postives = 52/87 (59.77%), Query Frame = 1 Query: 1 AVLNRLGSSFINGGKKS-QALLAGTNRV------TSSKKSAVVAALPPKKSWIPAVKGGGNLINPEWLDGLSPR*LRIRPTWTWKGP 240 A++N S F++GGKKS Q+LL ++V TS K V AA PKKSWIPAVKGGGN ++PEWLDG P P K P Sbjct: 9 AIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDP 95
BLAST of CX296814 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 265.388 bits (677), Expect = 1.715e-70 Identity = 121/146 (82.88%), Postives = 134/146 (91.78%), Query Frame = 2 Query: 191 SLPGDYGFDPLGLGKDPSFLKWHREAELIHGRWAMTAIVGIFVRHE*SDIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWFDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFYPL*LAGTIKDGVYIPDTEKL 628 SLPGD+GFDPLGLGKDP+FLKW+REAELIHGRWAM A++GIFV S IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW DFF+ +SQS++WATPWS+TAENFAN TGEQGYPGGKFF PL LAGT+ +GVY+PDTEKL Sbjct: 74 SLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKL 219 HSP 2 Score: 85.8853 bits (211), Expect = 1.863e-16 Identity = 48/83 (57.83%), Postives = 55/83 (66.27%), Query Frame = 1 Query: 1 AVLNRLGSSFINGGKKSQALLAG--TNRVTSSKKSAVVAA-LPPKKSWIPAVKGGGNLINPEWLDGLSPR*LRIRPTWTWKGP 240 AVLN L SSF+ GGKK+QALL T RVT+ K+ V AA + PKKSWIPAVK GGNL++PEWLDG P P K P Sbjct: 8 AVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDP 90
BLAST of CX296814 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.342e-20 Identity = 52/134 (38.81%), Postives = 70/134 (52.24%), Query Frame = 2 Query: 191 SLPGDYGFDPLGLGKDPSFLKWHREAELIHGRWAMTAIVGIFVRHE*SDI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWFDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFYPL 574 SLPGD+GFDPLGLG DP LKW+ +AEL+H RWAM GIF+ + I W+ AG +L +L+L+GW E +RW D P + + P ++ + GYPGG +F PL Sbjct: 81 SLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFT---DTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPL 205 HSP 2 Score: 25.0238 bits (53), Expect = 2.342e-20 Identity = 19/66 (28.79%), Postives = 29/66 (43.94%), Query Frame = 1 Query: 1 AVLNRLGSSFINGGKKSQALLAGTNRVTSSKKSAVVAALPPKKSWIPAVKGGGNLINPEWLDGLSP 198 +++ +SF+ GGK+ + + S + VAA P + W P PEWLDG P Sbjct: 25 SIVGATKASFL-GGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTP------PEWLDGSLP 83
BLAST of CX296814 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 5.154e-20 Identity = 50/134 (37.31%), Postives = 70/134 (52.24%), Query Frame = 2 Query: 191 SLPGDYGFDPLGLGKDPSFLKWHREAELIHGRWAMTAIVGIFVRHE*SDI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWFDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFYPL 574 SLPGD+GFDPLGL DP L+W+++AEL+H RWAM GIF+ + I W+ AG +L +L+L+GW E +RW D P + + P ++ + GYPGG +F PL Sbjct: 81 SLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFT---DTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPL 205 HSP 2 Score: 27.7202 bits (60), Expect = 5.154e-20 Identity = 18/66 (27.27%), Postives = 28/66 (42.42%), Query Frame = 1 Query: 1 AVLNRLGSSFINGGKKSQALLAGTNRVTSSKKSAVVAALPPKKSWIPAVKGGGNLINPEWLDGLSP 198 +++ +SF+ GG++ + T S + VAA P + W P P WLDG P Sbjct: 25 SIVGTTKASFL-GGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP------GSTPPPWLDGSLP 83
BLAST of CX296814 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16 Identity = 52/141 (36.88%), Postives = 75/141 (53.19%), Query Frame = 2 Query: 191 SLPGDYGFDPLGLGKDPSFLKWHREAELIHGRWAMTAIVGIFVRHE*SDI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWFDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFYPL*LAGTIK 595 SLPGD GFDPLGL +DP L+W +AEL++GRWAM + G+ + + I W+ AG + S +L + +L +VE +RW D NP S + + + ++ GE GYPGG F PL A T++ Sbjct: 69 SLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFA---SSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPAGEVGYPGG-IFNPLNFAPTLE 199
BLAST of CX296814 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.245e-16 Identity = 53/139 (38.13%), Postives = 75/139 (53.96%), Query Frame = 2 Query: 191 SLPGDYGFDPLGLGKDPSFLKWHREAELIHGRWAMTAIVG-----IFVRHE*SDIP-WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWFDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFYPL*LAGT 589 SL GD GFDPLGL +DP LKW +AEL++GRWAM + G +F + ++P W++AG + S +L + +L +VE +RW D NP S + + + ++ GE GYPGG F PL A T Sbjct: 70 SLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFA---SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPKGEVGYPGG-IFNPLNFAPT 198 The following BLAST results are available for this feature:
BLAST of CX296814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296814 ID=CX296814; Name=CX296814; organism=Citrus clementina; type=EST; length=628bpback to top |