CX296818

Overview
NameCX296818
Unique NameCX296818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296818 vs. ExPASy Swiss-Prot
Match: ZIP11_ARATH (Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP11 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 6.721e-64
Identity = 118/167 (70.66%), Postives = 136/167 (81.44%), Query Frame = -3
Query:  192 SSKFSLTAASSLGDSILLIVALCFHSVFEGIAIGVAETQADAWKALWTICLHKIFAAIAMGIALLRMIPDRPFLSCVAYAFAFAISSPVGVAIGIIIDATTQGPVADWIFAISMGLACGVFIYVSINHLLSKGYTPQKTVSVDTPNYKFXXXXXXXXXXXXXXIWDT 692
            S++ S T  +S+GDSILLIVALCFHSVFEGIAIG++ET++DAW+ALWTI LHKIFAAIAMGIALLRMIPDRP  S + Y+FAFAISSP+GVAIGI+IDATTQG +ADWIFA+SM LACGVF+YVS+NHLL+KGY P K V VD P YKF              IWDT
Sbjct:  160 SNQRSATTETSIGDSILLIVALCFHSVFEGIAIGISETKSDAWRALWTITLHKIFAAIAMGIALLRMIPDRPLFSSITYSFAFAISSPIGVAIGIVIDATTQGSIADWIFALSMSLACGVFVYVSVNHLLAKGYRPNKKVHVDEPRYKFLAVLFGVVVIAIVMIWDT 326          
BLAST of CX296818 vs. ExPASy Swiss-Prot
Match: ZIP2_ARATH (Zinc transporter 2 OS=Arabidopsis thaliana GN=ZIP2 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.717e-51
Identity = 96/162 (59.26%), Postives = 120/162 (74.07%), Query Frame = -3
Query:  195 SLTAASSLGDSILLIVALCFHSVFEGIAIGVAETQADAWKALWTICLHKIFAAIAMGIALLRMIPDRPFLSCVAYAFAFAISSPVGVAIGIIIDATTQGPVADWIFAISMGLACGVFIYVSINHLLSKGYTPQKTVSVDTPNYKFXXXXXXXXXXXXXXIWD 680
            +L   S  GD+ LLI ALCFHS+FEGIAIG+++T++DAW+ LWTI LHK+FAA+AMGIALL++IP RPF   V Y+FAF ISSP+GV IGI I+AT+QG   DW +AISMGLACGVF+YV++NHL+SKGY P++    D P YKF              IWD
Sbjct:  192 ALIRTSGFGDTALLIFALCFHSIFEGIAIGLSDTKSDAWRNLWTISLHKVFAAVAMGIALLKLIPKRPFFLTVVYSFAFGISSPIGVGIGIGINATSQGAGGDWTYAISMGLACGVFVYVAVNHLISKGYKPREECYFDKPIYKFIAVFLGVALLSVVMIWD 353          
BLAST of CX296818 vs. ExPASy Swiss-Prot
Match: ZNTD_DICDI (Protein zntD OS=Dictyostelium discoideum GN=zntD PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 41/128 (32.03%), Postives = 73/128 (57.03%), Query Frame = -3
Query:  297 LTAASSLGDSILLIVALCFHSVFEGIAIGVAETQADAWKALWTICLHKIFAAIAMGIALLRMIPDRP-FLSCVAYAFAFAISSPVGVAIGIIIDATTQGPVADWIFAISMGLACGVFIYVSINHLLSK 677
            +T  S++    +L++AL  HS+FEG+A+GV  ++   +  L  I  HKI A+ A+GI+ +    ++P FL      F F+++SP+G  +G++I     G     +  I  G+A G F+YV++  ++ K
Sbjct:  528 VTKKSNILLPFILVIALSIHSLFEGLAMGVQSSEIRVFDILIAIFAHKILASFALGISTITSSNEKPSFLKLFLLVFVFSLTSPIGSILGMVI--VGSGVTGSMVPPILQGIASGTFLYVAVVEIIPK 653          
BLAST of CX296818 vs. ExPASy Swiss-Prot
Match: S39A1_DANRE (Zinc transporter ZIP1 OS=Danio rerio GN=slc39a1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = -3
Query:  303 GHSSKFSLTAASSLGDSILLIVALCFHSVFEGIAIGVAETQADAWKALWTICLHKIFAAIAMGIALLRMIPDRPFLSCVAYAFAFAISSPVGVAIGIIIDATTQGPVADWIFAISMGLACGVFIYVSINHLL 698
            GH       A SS   S +L ++L  HSVFEG+AIG+  T A   +    I +HK     ++ + L++    +P L  V Y   FAI SP+G+ IGI++   T+      I A+  GLA G FIY++   +L
Sbjct:  144 GHHVHVDFHAHSSFR-SFMLFLSLSLHSVFEGLAIGLQTTNAKVLEICIAILVHKSIIVFSLSVKLVQSAV-KP-LWVVLYVTVFAIMSPLGIGIGIVV-IETERQAGGLIQAVLEGLAAGTFIYITFLEIL 271          
BLAST of CX296818 vs. ExPASy Swiss-Prot
Match: ZNTC_DICDI (Protein zntC OS=Dictyostelium discoideum GN=zntC PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 47/145 (32.41%), Postives = 78/145 (53.79%), Query Frame = -3
Query:  294 NGTDGHSSKFSLTA----ASSLGDSILLIVALCFHSVFEGIAIGVAETQADAWKALW-TICLHKIFAAIAMGIALLRMIPDRPFLSCVAYAFAFAISSPVGVAIGIIIDATTQGPV-ADWIFAISMGLACGVFIYVSINHLLSKG 710
            + ++GHS K    +     SS   + + +VAL  HS+F+G+ +G +ETQ D++  L   +  HK    + +GIA+        F SC+A  FA A+ +P+G+ IG+ I +  +    A  +  I + + CG FIY+S+  LL  G
Sbjct:  232 HSSNGHSHKDEKDSEKVNVSSKSKAWVFLVALSLHSIFDGLGLG-SETQKDSFYGLLIAVLAHKFLDGLVLGIAIKYAYFSFKF-SCIALVFAAAM-TPLGIGIGMAISSAYESSTDAYLVKGIILSITCGSFIYISLIELLPSG 373          
The following BLAST results are available for this feature:
BLAST of CX296818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ZIP11_ARATH6.721e-6470.66Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP... [more]
ZIP2_ARATH1.717e-5159.26Zinc transporter 2 OS=Arabidopsis thaliana GN=ZIP2... [more]
ZNTD_DICDI8.331e-1432.03Protein zntD OS=Dictyostelium discoideum GN=zntD P... [more]
S39A1_DANRE1.018e-1135.61Zinc transporter ZIP1 OS=Danio rerio GN=slc39a1 PE... [more]
ZNTC_DICDI3.870e-1132.41Protein zntC OS=Dictyostelium discoideum GN=zntC P... [more]
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Properties
Property NameValue
Genbank descriptionC05803B09SK FerrChloL1 Citrus clementina cDNA clone C05803B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296818 ID=CX296818; Name=CX296818; organism=Citrus clementina; type=EST; length=715bp
AAACATGGCATTAACCTTTTGACACAAAATTGAAAATTTGCTTTCACACT
GGTACATTTCTGTTCTTACTTGAAAGTCTATCCTAAGGAGCATCAACAAT
GTGGTAGTCTTGGTAATAATTTAGAGCTAAAAGCAAAGTGCGCCAGACAG
AAGTAAACAAGAACCCGACACGCACCCACTTCAGCATTTCAAGTGTCCCA
AATCATCACAACGGCGATTACTCCAACACCCAGCACTACAGCTAAGAACT
TATAGTTGGGTGTGTCCACTGAAACTGTCTTCTGGGGTGTGTAACCTTTA
GATAGCAGATGGTTTATAGATACGTAAATGAACACGCCGCATGCTAAACC
CATTGATATGGCAAAAATCCAGTCCGCCACAGGACCTTGAGTTGTGGCAT
CAATTATAATACCTATGGCCACACCAACTGGACTAGAAATTGCAAATGCG
AATGCATAGGCTACACATGATAAGAAGGGGCGATCTGGGATCATTCGAAG
AAGAGCTATTCCCATTGCAATGGCTGCAAATATCTTGTGCAAACAAATTG
TCCACAAAGCTTTCCACGCATCAGCTTGTGTTTCTGCCACTCCAATTGCA
ATGCCCTCAAAGACTGAATGGAAACACAAGGCGACAATTAATAAGATGCT
ATCCCCAAGCGAGCTGGCAGCTGTAAGCGAAAATTTTGAAGAATGCCCAT
CTGTACCATTTTGGC
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