CX296837

Overview
NameCX296837
Unique NameCX296837
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9113 contig Ccv1_Contig9113:717..1459. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296837 vs. ExPASy Swiss-Prot
Match: Y3885_ARATH (Uncharacterized protein At3g28850 OS=Arabidopsis thaliana GN=At3g28850 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 59/141 (41.84%), Postives = 79/141 (56.03%), Query Frame = -3
Query:  387 VDERDVSMDSAYKKELQCVFG-----GKNVTLPQVFIRGKHVGNADVLKSMYETGELARVLDGFPRRQP-----GFVCGSCGDVRFVPCGNCSGSRKVF----------DEADGVP----------KRCLECNENGLIRCP 719
            VDERDVSM S +K EL+ + G     G  +TLP+VF+  K++G A+ ++ + E G+L ++L G  R +      G  C +CGDVRFVPC  CSGS KV+          DE D             + C +CNENGLIRCP
Sbjct:  284 VDERDVSMHSGFKDELKELLGEKFNKGVGITLPRVFLGRKYIGGAEEIRKLNEDGKLEKLLGGCERVEENQNGNGLECEACGDVRFVPCETCSGSCKVYYEYEDDDDDDDEGDDDESVKEEREYGFQTCPDCNENGLIRCP 424          
BLAST of CX296837 vs. ExPASy Swiss-Prot
Match: Y5986_ARATH (Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 57/128 (44.53%), Postives = 79/128 (61.72%), Query Frame = -3
Query:  390 VDERDVSMDSAYKKELQCVFGGK-----NVTLPQVFIRGKHVGNADVLKSMYETGELARVLDGFPRRQ---PGF--VCGSCGDVRFVPCGNCSGSRKVF----DEADGVP----KRCLECNENGLIRC 719
            +DERDVSM S +K EL+ +  GK      +TLP+VF+  K++G  + +K + E GEL +++      +   PGF   C +CGDVRFVPC  CSGS K++    +E +GV     +RC  CNENGLIRC
Sbjct:  258 IDERDVSMHSGFKDELKKLLEGKFNNGVGITLPRVFLGNKYLGGVEEIKKLNENGELEKLIKDCEMVEDGSPGFGNECEACGDVRFVPCETCSGSCKLYHEGEEEDEGVTEYGFQRCPYCNENGLIRC 385          
BLAST of CX296837 vs. ExPASy Swiss-Prot
Match: GRCR1_DROME (Glutaredoxin domain-containing cysteine-rich protein CG31559 OS=Drosophila melanogaster GN=CG31559 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.283e-16
Identity = 38/113 (33.63%), Postives = 68/113 (60.18%), Query Frame = -3
Query:  390 DERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMYETGELARVLDGFPRRQPGFVCGSCGDVRFVPCGNCSGSRKVFDE----ADGVPKRCLECNENGLIRC 716
            +ERDV M   Y+ E++       V +PQ+++ G+H+G+A+ ++ M E+GEL ++L  +      + C +CG  R +PC +C+GS+K        A+ V  +C+ C+E GL++C
Sbjct:  339 EERDVFMSVEYQAEMRQRMQSGQVRVPQLYVEGQHIGDAETVERMNESGELRQLLKPYKSMASTYTCQTCGGYRLLPCPSCNGSKKSVHRNHFTAEFVALKCMNCDEVGLVKC 451          
BLAST of CX296837 vs. ExPASy Swiss-Prot
Match: GRCR2_DROME (Glutaredoxin domain-containing cysteine-rich protein CG12206 OS=Drosophila melanogaster GN=CG12206 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.600e-16
Identity = 37/115 (32.17%), Postives = 71/115 (61.74%), Query Frame = -3
Query:  384 DERDVSMDSAYKKELQCVFGGKNVTLPQVFIRGKHVGNADVLKSMYETGELARVLDGFPRRQPGFVCGSCGDVRFVPCGNCSGSRKVFDE----ADGVPKRCLECNENGLIRCPD 716
            +ERD+ M   Y++E++     + + +PQ+F+ G+ +G+A++++ + E+GEL ++L  +      + C +CG  R +PC  C+GS+K        A+ V  +C+ C+E GLI+CP+
Sbjct:  467 EERDIFMSVEYQQEMRERMQDETIRVPQLFVEGQLIGDANIVERLNESGELRQLLRPYKSIATAYTCQTCGGYRMLPCPACNGSKKSMHRNHFTAEFVALKCMNCDEVGLIKCPN 581          
BLAST of CX296837 vs. ExPASy Swiss-Prot
Match: GRCR1_MOUSE (Glutaredoxin domain-containing cysteine-rich protein 1 OS=Mus musculus GN=Grxcr1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.437e-13
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = -3
Query:  390 DERDVSMDSAYKKEL--QCVFGGKNVTLPQVFIRGKHVGNADVLKSMYETGELARVLDGFPRRQPGFVCGSCGDVRFVPCGNCSGS-----RKVFDEADGVPKRCLECNENGLIRC 716
            +E++++++  Y KEL  +C    +  +LP VFI G ++G A+ + SM E+GEL  +L    R Q    C SCG   F+PC  C GS     R  F +A    K C  CNENGL RC
Sbjct:  171 EEKNIALNGDYGKELDERCRRVSEAPSLPVVFIDGHYLGGAEKILSMNESGELQDLLTKIERVQHPHECPSCGGFGFLPCSVCHGSKMSVFRNCFTDAFKALK-CTACNENGLQRC 285          
BLAST of CX296837 vs. ExPASy Swiss-Prot
Match: GRCR1_HUMAN (Glutaredoxin domain-containing cysteine-rich protein 1 OS=Homo sapiens GN=GRXCR1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.437e-13
Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = -3
Query:  390 DERDVSMDSAYKKEL--QCVFGGKNVTLPQVFIRGKHVGNADVLKSMYETGELARVLDGFPRRQPGFVCGSCGDVRFVPCGNCSGS-----RKVFDEADGVPKRCLECNENGLIRC 716
            +E++++++  Y KEL  +C    +  +LP VFI G ++G A+ + SM E+GEL  +L    R Q    C SCG   F+PC  C GS     R  F ++    K C  CNENGL RC
Sbjct:  171 EEKNIALNGEYGKELDERCRRVSEAPSLPVVFIDGHYLGGAEKILSMNESGELQDILTKIERVQHPHECPSCGGFGFLPCSVCHGSKMSMFRNCFTDSFKALK-CTACNENGLQRC 285          
The following BLAST results are available for this feature:
BLAST of CX296837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
Y3885_ARATH9.862e-2141.84Uncharacterized protein At3g28850 OS=Arabidopsis t... [more]
Y5986_ARATH1.288e-2044.53Uncharacterized protein At5g39865 OS=Arabidopsis t... [more]
GRCR1_DROME3.283e-1633.63Glutaredoxin domain-containing cysteine-rich prote... [more]
GRCR2_DROME5.600e-1632.17Glutaredoxin domain-containing cysteine-rich prote... [more]
GRCR1_MOUSE4.437e-1339.66Glutaredoxin domain-containing cysteine-rich prote... [more]
GRCR1_HUMAN4.437e-1338.79Glutaredoxin domain-containing cysteine-rich prote... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05803D04SK FerrChloL1 Citrus clementina cDNA clone C05803D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296837 ID=CX296837; Name=CX296837; organism=Citrus clementina; type=EST; length=742bp
AGTATAGAATCATATAAACTGTAGTACACCTCCCTTCTAAATGAAGGAAA
AGTCGTAGAACATAGGGCATAAAAAACAAACCCGTTCTCTCATTACAATA
CATCATATGCGACAGTTTACAAATCCATTACAGTAAATTGACACTAAGTA
TTTACATTCCACAAATGAGAAACACATTTCCCTGTTATTAAATACATAGA
AACATTATTCCATAATGCCTTTCAGCAAGACATTCGACAAATGAAGAACA
CAAATGAAAGAAGCCATAAATGAATCCAAAGAGCCATTTTGGATACATAC
ATTAACAACCATATATCGACATCATTACACATCATGAAAACATCATGACA
CACAAAAAGAAAGCACAATCACGAGGAGCAGCAATCAGGGCAACGAATCA
AGCCATTCTCGTTACATTCCAAGCACCGTTTAGGCACACCATCGGCCTCA
TCAAACACCTTCCGACTCCCACTACAATTCCCACAAGGGACGAACCTCAC
ATCCCCACAACTCCCACACACGAACCCAGGTTGCCGTCTAGGGAACCCAT
CAAGAACCCTAGCCAATTCACCGGTTTCATACATACTCTTCAACACATCA
GCATTTCCCACATGCTTTCCCCGGATAAAAACCTGCGGCAAAGTCACATT
CTTCCCACCAAATACACACTGTAATTCTTTCTTATACGCGGAATCCATCG
AAACATCTCTCTCGTCAACCCAACTCTAAACCTCTAATATCA
back to top