CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_FLATR (Aminomethyltransferase, mitochondrial OS=Flaveria trinervia GN=GDCST PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.503e-85
Identity = 149/180 (82.78%), Postives = 165/180 (91.67%), Query Frame = -3
Query:  189 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 728
            TGEDG +ISVPSE AVDLAKAILEKSEGKVR TGLGARDSLRLEAGLCLYGNDMEQH+TPVEAGLTWAIGKRRRAEGGFLGAE ILKQ+ +GP +RRVG F+ GPPARSHS++ +EQG  IGE+TSGGFSPCLKKNI MGYVKSGLHK GTK+KI +RGK Y+G++TKMPFVPTKYYKP+
Sbjct:  228 TGEDGFEISVPSENAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHITPVEAGLTWAIGKRRRAEGGFLGAEVILKQIADGPAIRRVGLFSTGPPARSHSEIQNEQGENIGEVTSGGFSPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEGSVTKMPFVPTKYYKPA 407          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ARATH (Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=GDCST PE=1 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.091e-84
Identity = 152/180 (84.44%), Postives = 164/180 (91.11%), Query Frame = -3
Query:  189 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 728
            TGEDG +ISVP E AVDLAKAILEKSEGKVR TGLGARDSLRLEAGLCLYGNDMEQH++PVEAGLTWAIGKRRRAEGGFLGA+ IL+QL +GP +RRVGFF+ GPPARSHS+VHDE GN IGEITSGGFSP LKKNIAMGYVKSG HK GTKVKI VRGK Y+G+ITKMPFV TKYYKP+
Sbjct:  229 TGEDGFEISVPDEHAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHISPVEAGLTWAIGKRRRAEGGFLGADVILQQLKDGPTIRRVGFFSSGPPARSHSEVHDESGNKIGEITSGGFSPNLKKNIAMGYVKSGQHKTGTKVKILVRGKPYEGSITKMPFVATKYYKPT 408          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SOLTU (Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.731e-84
Identity = 148/179 (82.68%), Postives = 162/179 (90.50%), Query Frame = -3
Query:  192 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKP 728
            TGEDG +ISVPSE A+DLAKA+LEKSEGK+R TGLGARDSLRLEAGLCLYGNDMEQH TPVEAGLTWAIGKRRRAEGGFLGAE ILKQ++EGP +RRVGFF+ GPP RSHS++ D  G  IGEITSGGFSPCLKKNIAMGYVK+G HKAGT VKI +RGK+YDG +TKMPFVPTKYYKP
Sbjct:  228 TGEDGFEISVPSENALDLAKALLEKSEGKIRLTGLGARDSLRLEAGLCLYGNDMEQHTTPVEAGLTWAIGKRRRAEGGFLGAEVILKQIEEGPKIRRVGFFSSGPPPRSHSEIQDSNGQNIGEITSGGFSPCLKKNIAMGYVKTGNHKAGTNVKIVIRGKSYDGVVTKMPFVPTKYYKP 406          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_FLAPR (Aminomethyltransferase, mitochondrial OS=Flaveria pringlei GN=GDCST PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.567e-84
Identity = 147/180 (81.67%), Postives = 165/180 (91.67%), Query Frame = -3
Query:  189 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 728
            TGEDG +ISVPSE AVDLAKAILEKSEGKVR TGLGARDSLRLEAGLCLYGNDMEQH+TPVEAGLTWAIGKRRRAEGGFLGA+ ILKQ+ +GP +RRVG F+ GPPARSHS++ +E+G  IGE+TSGGFSPCLKKNI MGYVKSGLHK GTK+KI +RGK Y+G++TKMPFVPTKYYKP+
Sbjct:  228 TGEDGFEISVPSENAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHITPVEAGLTWAIGKRRRAEGGFLGADVILKQIADGPAIRRVGLFSTGPPARSHSEIQNEKGENIGEVTSGGFSPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEGSVTKMPFVPTKYYKPA 407          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_FLAAN (Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.567e-84
Identity = 147/180 (81.67%), Postives = 165/180 (91.67%), Query Frame = -3
Query:  189 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 728
            TGEDG +ISVPSE AVDLAKAILEKSEGKVR TGLGARDSLRLEAGLCLYGNDMEQH+TPVEAGLTWAIGKRRRAEGGFLGA+ ILKQ+ +GP +RRVG F+ GPPARSHS++ +E+G  IGE+TSGGFSPCLKKNI MGYVKSGLHK GTK+KI +RGK Y+G++TKMPFVPTKYYKP+
Sbjct:  228 TGEDGFEISVPSENAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHITPVEAGLTWAIGKRRRAEGGFLGADVILKQIADGPAIRRVGLFSTGPPARSHSEIQNEKGENIGEVTSGGFSPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEGSVTKMPFVPTKYYKPA 407          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_PEA (Aminomethyltransferase, mitochondrial OS=Pisum sativum GN=GDCST PE=1 SV=2)

HSP 1 Score: 306.605 bits (784), Expect = 8.786e-83
Identity = 145/180 (80.56%), Postives = 163/180 (90.56%), Query Frame = -3
Query:  189 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 728
            TGEDG +ISVPSE  V+LAKA+LEKSEGK+R TGLGARDSLRLEAGLCLYGND+EQH+TP+EAGLTWAIGKRRRAEGGFLGA+ ILKQL +GP +RRVGF + GPP RSHS++ DE GN IGE+TSGGFSPCLKKNIA+GYVKSGLHKAGTKVKI +RGK  +G +TKMPFVPTKYYKPS
Sbjct:  229 TGEDGFEISVPSEHGVELAKALLEKSEGKIRLTGLGARDSLRLEAGLCLYGNDLEQHITPIEAGLTWAIGKRRRAEGGFLGADVILKQLADGPSIRRVGFISSGPPPRSHSEIQDEGGNNIGEVTSGGFSPCLKKNIAIGYVKSGLHKAGTKVKIIIRGKQNEGVVTKMPFVPTKYYKPS 408          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_MESCR (Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCST PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.692e-81
Identity = 144/178 (80.90%), Postives = 160/178 (89.89%), Query Frame = -3
Query:  195 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 728
            TGEDG +ISVP+E AVDLAKA+LEKSEGKVR TG GARDSLRLEAGLCLYGND+EQH+TP+EAGLTWA+GKRRRAEGGFLGAE ILKQ+ +GPP RRVGF + GPPAR HS++ +E+G  IGEITSGGFSPCLKKNIAMGYVKSG HKAGTKV I VRGK Y+G +TKMPFVPTKYYK
Sbjct:  229 TGEDGFEISVPNEYAVDLAKAMLEKSEGKVRLTGRGARDSLRLEAGLCLYGNDLEQHITPIEAGLTWAVGKRRRAEGGFLGAEVILKQIADGPPQRRVGFISSGPPARGHSEIQNEKGESIGEITSGGFSPCLKKNIAMGYVKSGNHKAGTKVNILVRGKPYEGVVTKMPFVPTKYYK 406          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SCHPO (Probable aminomethyltransferase, mitochondrial OS=Schizosaccharomyces pombe GN=gcv1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.415e-48
Identity = 94/178 (52.81%), Postives = 125/178 (70.22%), Query Frame = -3
Query:  195 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 728
            TGEDG ++S+P E +VD A  +L  ++ +VR  GLGARD+LRLEAG+CLYG+D++   +PVE  L+W IGKRRR EGGF+G+ +ILK+L +GP  RRVGF     PAR H    +  G  +G++TSG  SP L KNIAMGY+ +GLH+ GT   I+VR K +   + +MPFV T YYK
Sbjct:  213 TGEDGFEVSIPEEVSVDFASTLL--ADTRVRPIGLGARDTLRLEAGMCLYGSDIDDTTSPVEGSLSWIIGKRRRKEGGFVGSSRILKELKDGPSRRRVGFIVEKVPAR-HGSAVEVDGVEVGQVTSGCPSPTLGKNIAMGYISTGLHQVGTPAHIKVRNKLHPAQVVRMPFVETHYYK 387          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_CHICK (Aminomethyltransferase, mitochondrial OS=Gallus gallus GN=AMT PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 6.577e-46
Identity = 96/177 (54.24%), Postives = 123/177 (69.49%), Query Frame = -3
Query:  198 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 728
            TGEDG++ISVP+ RAV+LA+ +L   E  V   GL ARDSLRLEAGLCLYGND+++  TPVEAGL W +GKRRR    F GA  I++Q+ E P  +RVG  + GPP R  + +   +G P+G +TSG  SP L KNIAMGYV++   + GT + +EVR K +   +TKMPFVPT YY
Sbjct:  215 TGEDGVEISVPAGRAVELAERLLGCPE--VWPAGLAARDSLRLEAGLCLYGNDIDESTTPVEAGLLWTLGKRRRTAMDFPGAAIIMEQVKEKPKRKRVGLTSVGPPLRPPAAILGPEGTPVGTVTSGCPSPSLGKNIAMGYVQAAHSRPGTTLTVEVRKKQHPALVTKMPFVPTHYY 389          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_CANFA (Aminomethyltransferase, mitochondrial OS=Canis familiaris GN=AMT PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.577e-46
Identity = 97/177 (54.80%), Postives = 120/177 (67.80%), Query Frame = -3
Query:  198 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 728
            TGEDG++ISVP+  AV LA A+LE  E  V+  GL ARDSLRLEAGLCLYG+D+++H TPVE  L+W +GKRRRA   F GA  I+ QL      RRVG    G P R+HS + + +G  IG +TSG  SPCLKKN+AMGYV S   + GT + +EVR K     ++KMPFV T YY
Sbjct:  226 TGEDGVEISVPAAAAVRLAAALLENPE--VKLAGLAARDSLRLEAGLCLYGSDIDEHTTPVEGSLSWTLGKRRRAAMDFPGASVIIAQLKGKVQRRRVGLTCEGAPVRAHSPILNMEGTVIGTVTSGCPSPCLKKNVAMGYVPSEYSRPGTPLLVEVRRKQQMAVVSKMPFVTTNYY 400          
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_FLATR5.503e-8582.78Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_ARATH2.091e-8484.44Aminomethyltransferase, mitochondrial OS=Arabidops... [more]
GCST_SOLTU2.731e-8482.68Aminomethyltransferase, mitochondrial OS=Solanum t... [more]
GCST_FLAPR3.567e-8481.67Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_FLAAN3.567e-8481.67Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_PEA8.786e-8380.56Aminomethyltransferase, mitochondrial OS=Pisum sat... [more]
GCST_MESCR3.692e-8180.90Aminomethyltransferase, mitochondrial OS=Mesembrya... [more]
GCST_SCHPO2.415e-4852.81Probable aminomethyltransferase, mitochondrial OS=... [more]
GCST_CHICK6.577e-4654.24Aminomethyltransferase, mitochondrial OS=Gallus ga... [more]
GCST_CANFA6.577e-4654.80Aminomethyltransferase, mitochondrial OS=Canis fam... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
back to top