CX296848

Overview
NameCX296848
Unique NameCX296848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length462
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296848_ssr8 microsatellite CX296848_ssr8:8..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1039 contig Ccv1_Contig1039:132..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296848 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.381e-18
Identity = 48/94 (51.06%), Postives = 57/94 (60.64%), Query Frame = 1
Query:   40 MARSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFL 321
            MARSF+N K+ SALVADG SN   + G++AA+                M+ K  EE     EKVSWVPDPVTG YRPEN  NE+D AD+RA  L
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93          
BLAST of CX296848 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.732e-13
Identity = 44/96 (45.83%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   40 MARSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 327
            MARS   AKL  A VADGIS +I +RGY+AA+                 L+    E +G+S   +W PDP+TG YRPEN A E+D A+LR M L H
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKND--LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLLNH 92          
BLAST of CX296848 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.006e-12
Identity = 40/100 (40.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:   40 MARSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSE----KVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 327
            MARS S+ KL  A + DG+  +I +RGYS A                 + ++ A + + SSE      +W PDPVTG YRPEN   E+D A+LR M L H
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNH 100          
BLAST of CX296848 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.597e-11
Identity = 40/100 (40.00%), Postives = 51/100 (51.00%), Query Frame = 1
Query:   40 MARSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSE----KVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 327
            MARS S+ K   A V D +  +I +RGYS A                 + ++ A + + SSE      +W PDPVTG YRPEN   E+D ADLR M L H
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNH 100          
The following BLAST results are available for this feature:
BLAST of CX296848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ARG2_PHAAU6.381e-1851.06Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
LEA5_CITSI4.732e-1345.83Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI4.006e-1240.00Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI2.597e-1140.00Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionC05803E03SK FerrChloL1 Citrus clementina cDNA clone C05803E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296848 ID=CX296848|Name=CX296848|organism=Citrus clementina|type=EST|length=462bp
ATCTCTTATCATCATCATCATCCCACATAACTAAGAAAAATGGCTCGCTC
TTTCTCAAACGCTAAGCTTTTCTCTGCTCTCGTCGCTGACGGAATCTCTA
ACGCCATCTACAAAAGAGGATACTCGGCGGCATCACAAGGCGCTGTGTCG
CGGGCAACAGGGGGAGCTAGGAGTGCTGCTGCGATGTTGAAGAAACCAGC
AGAAGAGATGACAGGATCCAGTGAGAAGGTCTCGTGGGTCCCAGACCCAG
TCACTGGTGTCTACAGGCCGGAGAATCTCGCCAACGAGCTCGATGGGGCC
GACCTCAGAGCCATGTTCTTGAAGCACAACAACTGATCATCAAAATTAAT
AAGTATTATTATTAATATATATTAATTCGGACATGGAAACTGAGGAAGGA
CGAAAGAAAAATTAAAAAAAGGTTAAAAAGGGATTTGTTCTGATGTGGTC
AGCCGCATGAGC
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