CX296857

Overview
NameCX296857
Unique NameCX296857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3319 contig Ccv1_Contig3319:281..1003. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: MCAT_ARATH (Mitochondrial carnitine/acylcarnitine carrier-like protein OS=Arabidopsis thaliana GN=BOU PE=1 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.919e-71
Identity = 134/174 (77.01%), Postives = 148/174 (85.06%), Query Frame = 2
Query:  209 MGDIAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAG---SGQVGVAVKYGGPVDVAKRVLRSEGGLRGLF 721
            M D  KDL SGTVGGAAQL+ GHPFDTIKVKLQSQP P PGQ P+Y GA+DAVKQT+A+EG +GLYKGMGAPLATVAAFNA+LFTVRGQME LLRS+ G PLT++QQ + GAGAG AVSFLACPTELIKCRLQAQ ALAG   +  V  AVKYGGP+DVA+ VLRSEGG RGLF
Sbjct:    1 MADAWKDLASGTVGGAAQLVVGHPFDTIKVKLQSQPTPAPGQLPRYTGAIDAVKQTVASEGTKGLYKGMGAPLATVAAFNAVLFTVRGQMEGLLRSEAGVPLTISQQFVAGAGAGFAVSFLACPTELIKCRLQAQGALAGASTTSSVVAAVKYGGPMDVARHVLRSEGGARGLF 174          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: DIF1_CAEEL (Protein dif-1 OS=Caenorhabditis elegans GN=dif-1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.504e-30
Identity = 70/171 (40.94%), Postives = 100/171 (58.48%), Query Frame = 2
Query:  209 MGDIAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLF 721
            M D+  +  +G VGG+  +I GHPFDT+KV++Q+ P P PG+ P++ GA+D VK+T++ EG   LYKGM APL  V+   A+ F      + L ++ P   +T  Q    GA AGV  + +  P E IKC LQ Q A    G  G  V Y GP+DV K+ L  +GG+  ++
Sbjct:    1 MSDVLLNFIAGGVGGSCTVIVGHPFDTVKVRIQTMPMPKPGEKPQFTGALDCVKRTVSKEGFFALYKGMAAPLVGVSPLFAVFFGGCAVGKWLQQTDPSQEMTFIQNANAGALAGVFTTIVMVPGERIKCLLQVQQA----GSAGSGVHYDGPLDVVKK-LYKQGGISSIY 166          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: MCFS_DICDI (Mitochondrial substrate carrier family protein S OS=Dictyostelium discoideum GN=mcfS PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.558e-26
Identity = 71/166 (42.77%), Postives = 93/166 (56.02%), Query Frame = 2
Query:  224 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLF 721
            KD  +GTV GAA L  GHPFDTI+V+LQ+   P+        G M+  + TI  EG  GLYKG+ +PL  +    A+LF   GQM+ LL+     PLTV Q  I G  AGV  S +  P EL+KCRLQ Q+            KY G +D   ++L+ EGG+RG +
Sbjct:    8 KDSIAGTVAGAACLFTGHPFDTIRVRLQTSNTPI--------GIMECFRNTIKYEGFSGLYKGVTSPLFGMMFETAVLFAGYGQMKVLLQKDENTPLTVGQCAIAGGFAGVGASVVLTPVELVKCRLQVQTT--------GPQKYKGSLDCLVQILK-EGGIRGAY 156          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: MCAT_MACFA (Mitochondrial carnitine/acylcarnitine carrier protein OS=Macaca fascicularis GN=SLC25A20 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.698e-26
Identity = 68/166 (40.96%), Postives = 94/166 (56.63%), Query Frame = 2
Query:  224 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLF 721
            K+L +G  GG   +  GHP DT+KV+LQ+QP  LPGQPP Y+G  D  ++T+  EG RGLY+GM AP+  V    A+ F   G  + L +  P   L+  Q    G  +G+  + +  P E IKC LQ Q   A SG+     KY G +D AK+ L  E G+RG++
Sbjct:   12 KNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLFREGIRGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKHPEDVLSYPQLFAAGMLSGIFTTGIMTPGERIKCLLQIQ---ASSGE----TKYTGTLDCAKK-LYQEFGIRGIY 169          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: MCAT_RAT (Mitochondrial carnitine/acylcarnitine carrier protein OS=Rattus norvegicus GN=Slc25a20 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.269e-25
Identity = 69/166 (41.57%), Postives = 93/166 (56.02%), Query Frame = 2
Query:  224 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLF 721
            K+L +G  GG   +  GHP DT+KV+LQ+QP  LPGQPP Y+G +D  ++T+  EG  GLY+GM AP+  V    A+ F   G  + L +  P   LT  Q    G  +GV  + +  P E IKC LQ Q   A SG+     KY G +D AK+ L  E G+RG +
Sbjct:   12 KNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTIDCFRKTLFREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKRLQQKSPEDELTYPQLFTAGMLSGVFTTGIMTPGERIKCLLQIQ---ASSGK----NKYSGTLDCAKK-LYQEFGIRGFY 169          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: MCAT_HUMAN (Mitochondrial carnitine/acylcarnitine carrier protein OS=Homo sapiens GN=SLC25A20 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.693e-25
Identity = 68/166 (40.96%), Postives = 93/166 (56.02%), Query Frame = 2
Query:  224 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLF 721
            K+L +G  GG   +  GHP DT+KV+LQ+QP  LPGQPP Y+G  D  ++T+  EG  GLY+GM AP+  V    A+ F   G  + L +  P   L+  Q    G  +GV  + +  P E IKC LQ Q   A SG+     KY G +D AK+ L  E G+RG++
Sbjct:   12 KNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLFREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKHPEDVLSYPQLFAAGMLSGVFTTGIMTPGERIKCLLQIQ---ASSGE----SKYTGTLDCAKK-LYQEFGIRGIY 169          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: COLT_DROME (Congested-like trachea protein OS=Drosophila melanogaster GN=colt PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25
Identity = 67/166 (40.36%), Postives = 86/166 (51.81%), Query Frame = 2
Query:  224 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLF 721
            K   +G  GG   ++ GHP DTIKV+LQ+ P P PG+ P Y G  D   +TI  EG RGLYKGM APL  VA   A+ F      + L +    A LT  Q  + G+ +G+  + +  P E IK  LQ Q    G        KY G +D A + L  EGGLR +F
Sbjct:   17 KSFLTGGFGGICNVLSGHPLDTIKVRLQTMPRPAPGEQPLYRGTFDCAAKTIKNEGVRGLYKGMSAPLTGVAPIFAMCFAGYALGKRLQQRGEDAKLTYPQIFVAGSFSGLFSTLIMAPGERIKVLLQTQQGQGGER------KYNGMIDCAGK-LYKEGGLRSVF 175          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: MCAT_MOUSE (Mitochondrial carnitine/acylcarnitine carrier protein OS=Mus musculus GN=Slc25a20 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.833e-24
Identity = 67/166 (40.36%), Postives = 92/166 (55.42%), Query Frame = 2
Query:  224 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLF 721
            K+L +G  GG   +  GHP DT+KV+LQ+QP  L GQPP Y+G +D  ++T+  EG  GLY+GM AP+  V    A+ F   G  + L +  P   L+  Q    G  +GV  + +  P E IKC LQ Q   A SG+     KY G +D AK+ L  E G+RG +
Sbjct:   12 KNLLAGGFGGMCLVFVGHPLDTVKVRLQTQPPSLSGQPPMYSGTLDCFRKTLMREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKSPEDELSYPQLFTAGMLSGVFTTGIMTPGERIKCLLQIQ---ASSGE----NKYSGTLDCAKK-LYQEFGIRGFY 169          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: MCFG_DICDI (Mitochondrial substrate carrier family protein G OS=Dictyostelium discoideum GN=mcfG PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.188e-23
Identity = 63/169 (37.28%), Postives = 95/169 (56.21%), Query Frame = 2
Query:  224 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEAL---LRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLF 721
            KD+ +G++GG  Q+  GHP DTIKV+LQ+Q        P Y+G MD +K+TI+ EG  GLYKG+ +PL  ++  N+++F   GQ + L   L   P   L +      GA AG+A+ F+  P +L K ++Q Q         G   +Y    D AK++ +  GG+RG+F
Sbjct:   15 KDIVAGSIGGVGQVFTGHPLDTIKVRLQTQSVG----NPIYSGTMDCLKKTISQEGFAGLYKGVASPLVGLSIMNSVMFLAYGQSKTLIQKLSDNPNEALDLKGLTAAGALAGIAIGFVDAPVDLFKSQMQVQQ--------GDKNQYKSTADCAKQIWK-VGGVRGVF 170          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: MCATL_BOVIN (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Bos taurus GN=SLC25A29 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.241e-22
Identity = 66/168 (39.29%), Postives = 89/168 (52.98%), Query Frame = 2
Query:  218 IAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQ-MEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGL 718
            +A D  +G  GG A ++ GHPFDT+KV+LQ Q      + P+Y G +   +  I  E   GLY+G+G+PL  +   NAL+F V+G  + AL R  P        Q + GA AG     + CP EL K RLQ Q A       G A  Y GP+D   ++ R E GLRG+
Sbjct:    1 MALDFLAGCAGGVAGVLVGHPFDTVKVRLQVQSV----EKPQYRGTLHCFQAIIKQESVLGLYRGLGSPLLGLTFINALVFGVQGNTLRALGRDSP------LNQFLAGAAAGAIQCVICCPMELAKTRLQLQEA-------GPARTYRGPLDCLAQIYRQE-GLRGV 150          
The following BLAST results are available for this feature:
BLAST of CX296857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
MCAT_ARATH9.919e-7177.01Mitochondrial carnitine/acylcarnitine carrier-like... [more]
DIF1_CAEEL6.504e-3040.94Protein dif-1 OS=Caenorhabditis elegans GN=dif-1 P... [more]
MCFS_DICDI2.558e-2642.77Mitochondrial substrate carrier family protein S O... [more]
MCAT_MACFA5.698e-2640.96Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCAT_RAT1.269e-2541.57Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCAT_HUMAN3.693e-2540.96Mitochondrial carnitine/acylcarnitine carrier prot... [more]
COLT_DROME6.300e-2540.36Congested-like trachea protein OS=Drosophila melan... [more]
MCAT_MOUSE1.833e-2440.36Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCFG_DICDI1.188e-2337.28Mitochondrial substrate carrier family protein G O... [more]
MCATL_BOVIN2.241e-2239.29Mitochondrial carnitine/acylcarnitine carrier prot... [more]

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Properties
Property NameValue
Genbank descriptionC05803F01SK FerrChloL1 Citrus clementina cDNA clone C05803F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296857 ID=CX296857; Name=CX296857; organism=Citrus clementina; type=EST; length=721bp
CATTAAAAAGTAAACCCGAAGAAAAAATCAGAAAAATAAAACCCAGTTCC
TTTTTCCTGGCGTTTTTTTAATTTGTATACCCTCCTTTTAATCTAATACT
TTGTGTTTTCTCAAATTGAATCATTTGAGGGAAACAACTTTTCTCCACTA
GATTCGGTTGCCGTTCTCGGGGCTCTGCTTACTCCGGTGTCAGTGAGAAT
CGGCTCTGATGGGAGACATAGCCAAGGATCTATTTTCTGGGACTGTTGGA
GGGGCAGCACAATTAATATGTGGGCACCCATTTGATACCATCAAGGTCAA
GCTTCAAAGCCAGCCTGCTCCACTCCCTGGCCAACCTCCCAAGTATGCTG
GTGCCATGGATGCTGTCAAGCAAACCATAGCTGCCGAAGGGCCAAGGGGC
TTGTACAAAGGTATGGGAGCTCCACTAGCTACTGTTGCCGCTTTTAATGC
CCTCCTATTTACAGTGAGAGGACAAATGGAGGCACTGCTCAGATCTCAAC
CTGGTGCCCCACTAACCGTCAACCAGCAGATTATTTGCGGGGCTGGGGCT
GGTGTTGCTGTTTCTTTTCTTGCTTGCCCCACAGAATTGATCAAATGCAG
GTTGCAAGCCCAAAGTGCATTAGCAGGTTCTGGCCAAGTTGGTGTGGCAG
TGAAGTATGGTGGACCAGTGGATGTGGCTAAGCGTGTTCTTAGATCAGAA
GGCGGTCTTAGGGGTCTCTTC
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